Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00704 ATGCAAGCCTCCTCCTCCATCTTCATCTTCTTCTTCTTCTTGTTGTTTTTGTCATGTGCATTGTCTTCTTCACAACTCTTGTTGTTCAACAGAAGGGTCCTCCATGAACCCTTTATTCCTTTGACCTCTCTTCCTCCTTCTGAACCACCAAAACCACCACCTCCTTCTCCTTCTCCTTCTCCTTCTCTTTCAACCTCAAAACAAAAACCCAAATACCCTTCATCATCCATCATCCCCACAACCACCATTTCCTCCACACCAGTACCAACAACCACTACAACCCCAACAACAACACAATCACCATTTTTCCCCTTATACCCCTCTTCTCCTCCTCCTCCTTCTCCGATCACCTTTGCCTCCTTTCCTGCCAATATCTCCTCCCTCATTCTCCCTCACTCCCCAAAACCCAATTCCTCCTCCAACAAACTTCTTCCCGTCGCTCTCGCCGCCGTTCTCGCTGCCGCACTCGCCGTCTCCATCTCTGCCTTCGTCTGTTACCGCCGCCGACGGAACCCTCCCCCCTCCCCAGCAGCCAAAGTTCTCCGTTCCAACACTGAACTCCTCCCGCTCCGCCGCAATGCCGAAACTTCCGTCGAAACACGCAAGCTCCGGCACACGTCCTCTACCAGCTCCGAGTTTCTCTACCTCGGCACTGTCGCGAACTCTCACACGATCGAGGACGCCGACGTTGGCGACGGAGACCGGAAAATGGAATCCCCGGAGCTCCGGCCACTTCCGCCGCTCGCGCGACAAGCTTCGGTTCCGCTTCCGCCTCCACCCCGCGACGAGGCGGGTTTCACGACAGCGGAGGAGGATGAAGACGAATTTTACTCGCCGAGAGGTTCGTCGTTGGGAGGCTCCGGCGGAACCGGATCAGTTTCCAGGCGAGTGTTCGCCGTCGATCGAAGCGTGACCTCTAGCTCGTGTTCTTCCTCTTCTTCCGGATCGCCGGAAAGGTCTATCCTGAACATGCCGCCGCCGGCGAGTTCGAGTTATCGGAACACGCTGCCGAAATCACCGGAAAATTACAACCACCAGCACGTGCATTCTTCTCCTTCGATGTGCTCAACACCAGATAGGGTTTTTGCTGAACGTGATAACGATGTGTTAAGTGCATGTGTACATGCACATGCAGCACCATCATCATCGCATGAGGGAACGTTGGAGAAAAATGAAAATACATTACCTTCATCTCCACCACCGAGATTATCTGATGCTTCTTCGTCTTCCGCTTTTTCTCTTCCCTCTTCGCCGGAGAAGGTGACACGTCACCATACTTTCGATCAGTCTCCGAGAATGTCGAGTGTTTCCGACGGACTAATGTTACCTGGCTTGTCATCGGTGCCTTTATCACCCGCCCTGCTTTCATCGCCGGAAACCGAAAGAGGAACTTTCAGTGAATTGGGAACAGGTTCTTTTGGTGCGCAGAGAAAACACTGGAGCATTCCAGCACTGTCAATGCCAATAACAACACCGTTTGATGAAATTGGAAGCTTTCCAGGTCCTCCACCTTTGCCACAGAGGAAGCACTGGGAGATTCCAGGCACTGCTCCCCCACCACCACCACCGCCGTTGCCACGGCAGAGGAAGCAGTGGGGAGTTCCAGCGCCAGGGCCGTCAACGCCGGTTGGTCAACCGGTGTCAAGGCCACCAGAATTGGTGCCTCCTTCGAGGCCTTTTGTGTTGCAAAACCAAGCAACAAATGTTGAGTTGCCGGCGAGTTTGAGAGAAATTGAAGAGACTGGTAAACCAAAACTGAAGCCCCTGCATTGGGACAAAGTCAGAACAAGCTCTGAACGTGAAATGGTGTGGGATCAGATCAAGTCCAGTTCGTTTAAATTGAATGAGAAAATGATTGAAACGTTGTTTGTAGTGAACACACCAAACCCTAAGGCCAAGGATGCAACTACAAACTCTATTTCTCACCCGCCAAATCAGGAGGAAAGAGTACTCGATCCTAAAAAGTCTCAAAATATTTGTATCTTGCTGAAAGCGCTTAACGTCACTATAGAAGAAGTGTGTGAAGCACTTTTACAAGGTACTACTGATACACTTGGAACAGAATTACTCGAAAGCTTATTAAGAATGGCACCAAGCAAGGAAGAAGAACGTAAGTTGAGGGAACATAAAGATGACTCACCATCCAAGCTTGGTCTGGCTGAGAAATTTTTGAAGGCAGTTCTTGATGTACCTTTCGCATTTAAAAGGATTGAGGCAATGCTTTTCATAGCCAGTTTTGAGTCTGAAGTAGATTATCTCAGGACATCCTTTCAAACACTAGAGGCTGCCTGTGAAGAGCTGCGACATTCCAGAATGTTCTTGAAGCTGTTGGAGGCTGTACTTAAAACTGGGAACCGCATGAACGTGGGGACCAACCGTGGGGATGCAGAGGCATTCAAACTTGATACTCTTCTCAAGCTGGCTGATGTCAAAGGTGCAGATGGAAAAACCACTCTACTGCATTTTGTTGTACAAGAAATTATTCGAACCGAAGGTGCACGTCTCTTTGACACTAATCAAACTCCAAGCTCGACTACTTTGAACGAAGATGTCAAGTGTAGGAGGCTTGGTCTACAAGTTGTATCAAGCCTGAGTTCAGAGCTATCAAATGTGAAGAAGGCTGCTACTATGGATTCCGAAGTTCTCAGCAGTGATGTGTTAAAACTTTCCAAAGGAATTGCAAACATAGCAGAGGTTGTGCAGTTAAACCAAACCATGGGGTCAGATGAAAGCTGTCAGAATTTTACAGAATCAGTGAAGAAATTCATCAGAATGGCTGAGGAGGAAATTCCAAAAATTCAAGCCCAAGAAAGTGTTGCTTCCTCCCTTGTGAAGGAGATTACAGAGTATTTTCATGGGAACTTGTCAAAAGAAGAAGCTCATCCATTCAGGCTCTTCATGGTTGTAAGAGACTTTCTAGCGGTTCTTGACCGTGTCTGCAAAGAAGTTGGAATGATAAATGAGAGAACCATGGTTAGTTCAGCTCATAAATTCCCTGTGCCAGTTAACCCAATGCTTCCACAACCCCTTCCTGGATTACATGAGAGCCACCAATATAATAATAATAATAATAATAACAATACCTCTTCTTCTTCAGATGATGAGGCTCCATCACCTTAG 3120 0.4821 MQASSSIFIFFFFLLFLSCALSSSQLLLFNRRVLHEPFIPLTSLPPSEPPKPPPPSPSPSPSLSTSKQKPKYPSSSIIPTTTISSTPVPTTTTTPTTTQSPFFPLYPSSPPPPSPITFASFPANISSLILPHSPKPNSSSNKLLPVALAAVLAAALAVSISAFVCYRRRRNPPPSPAAKVLRSNTELLPLRRNAETSVETRKLRHTSSTSSEFLYLGTVANSHTIEDADVGDGDRKMESPELRPLPPLARQASVPLPPPPRDEAGFTTAEEDEDEFYSPRGSSLGGSGGTGSVSRRVFAVDRSVTSSSCSSSSSGSPERSILNMPPPASSSYRNTLPKSPENYNHQHVHSSPSMCSTPDRVFAERDNDVLSACVHAHAAPSSSHEGTLEKNENTLPSSPPPRLSDASSSSAFSLPSSPEKVTRHHTFDQSPRMSSVSDGLMLPGLSSVPLSPALLSSPETERGTFSELGTGSFGAQRKHWSIPALSMPITTPFDEIGSFPGPPPLPQRKHWEIPGTAPPPPPPPLPRQRKQWGVPAPGPSTPVGQPVSRPPELVPPSRPFVLQNQATNVELPASLREIEETGKPKLKPLHWDKVRTSSEREMVWDQIKSSSFKLNEKMIETLFVVNTPNPKAKDATTNSISHPPNQEERVLDPKKSQNICILLKALNVTIEEVCEALLQGTTDTLGTELLESLLRMAPSKEEERKLREHKDDSPSKLGLAEKFLKAVLDVPFAFKRIEAMLFIASFESEVDYLRTSFQTLEAACEELRHSRMFLKLLEAVLKTGNRMNVGTNRGDAEAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLFDTNQTPSSTTLNEDVKCRRLGLQVVSSLSSELSNVKKAATMDSEVLSSDVLKLSKGIANIAEVVQLNQTMGSDESCQNFTESVKKFIRMAEEEIPKIQAQESVASSLVKEITEYFHGNLSKEEAHPFRLFMVVRDFLAVLDRVCKEVGMINERTMVSSAHKFPVPVNPMLPQPLPGLHESHQYNNNNNNNNTSSSSDDEAPSP 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 998 1039 - -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 299 357 - -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 384 420 - -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 492 551 - -
Vimu6g00704 1039 ProSiteProfiles Formin homology-2 (FH2) domain profile. 576 1002 IPR015425 -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 44 106 - -
Vimu6g00704 1039 PANTHER FORMIN-RELATED 10 1020 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 452 471 - -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 62 103 - -
Vimu6g00704 1039 Pfam Formin Homology 2 Domain 580 976 IPR015425 -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 497 530 - -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 226 359 - -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 1014 1039 - -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 44 61 - -
Vimu6g00704 1039 Gene3D Formin, FH2 domain 576 985 IPR042201 -
Vimu6g00704 1039 SMART it6_source 576 991 IPR015425 -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 376 440 - -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 452 472 - -
Vimu6g00704 1039 MobiDBLite consensus disorder prediction 227 241 - -
Vimu6g00704 1039 SUPERFAMILY Formin homology 2 domain (FH2 domain) 518 988 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00704 Vimu-Chr6 8120083 8124009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00704 524 994 FH2 protein (formin) Gene Family AT2G43800 55.809 1.51e-163 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00704 - - vun:114185313 1583.93