Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00694 ATGGAGGATGCATTGGAGAACTGGATTTCCGATCTGGAAATGGAAGAATATGATGCATTTGATGAGCAAGAGTTCCTGAGAGAGATCCTTGAGGAGCCACAGAATTTGTCACCTGAAGGAGAGAATAACAGTCCCAGCAACAGCAGTTTGTCATTTGATGAGGCAATTGGTGAAACTCTGCAGAAAAGCTACAGTTCCAACTCCATCAAGTCCTTGAAAACATCATCACCACCACCACCATCATCATCAGCATACCTTCTCTCTTTTGATACTTCAACTGCTGAGCCAATCGCAAAAGCTAAGCCTTCTGCAAAGCTTGGTTCATCACTGCAGGGATCTTGCAGTAAAAGGGGTGGTGCTGCGGTCAAAGATGGATCTCAGTTTGAACCGGTCATGGCTCAGCCAAGAAAGAGGGTTAGAAGGTCTCGTGAGACACAGCATCACATCATTGCTGAGAGGAAAAGGAGACAGGAACTCACAGGGAGCATCATAGAACTTTCAGCCACCATTCCTGGACTCAAGAGGATGGACAAGGCTTACGTACTTCGTGAAGCAGTGAATTACACAAGACAACTTCAAGAGAGAGTGAAAGAGTTGGAAAACAAAAACAGTGAGAAAAGAGTAGTACATCATTCATCAACATTGGTAAGAAAATGTCAAGTTTCCCAAAAGAAAAACTTGAGCAATAGCAGTGAAAGGAACAAAGAATCACTGTTTGAGGTTAAAGCAAGAGTCCTAGATGAGGAAATACTGATTGGAATCCATTGTGAGAAGCAAAAGGACATAGTCTGCAACATACTGGCCTTTCTTGAAAAGCTGCATCTTTCTCCAACCAGTAGCAGTGTATTACCATTTGGCACTTGTACTCTTATAATCCACATCATTGCTCAGATGGATGAGGAATTCAGAATGAACATGGATGAGTTAGTGAAGAATCTGAGAGAATATCTGTTGGATGTGTATGACATGCAGCAAGTGAGTTTATGA 987 0.4245 MEDALENWISDLEMEEYDAFDEQEFLREILEEPQNLSPEGENNSPSNSSLSFDEAIGETLQKSYSSNSIKSLKTSSPPPPSSSAYLLSFDTSTAEPIAKAKPSAKLGSSLQGSCSKRGGAAVKDGSQFEPVMAQPRKRVRRSRETQHHIIAERKRRQELTGSIIELSATIPGLKRMDKAYVLREAVNYTRQLQERVKELENKNSEKRVVHHSSTLVRKCQVSQKKNLSNSSERNKESLFEVKARVLDEEILIGIHCEKQKDIVCNILAFLEKLHLSPTSSSVLPFGTCTLIIHIIAQMDEEFRMNMDELVKNLREYLLDVYDMQQVSL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00694 328 MobiDBLite consensus disorder prediction 36 86 - -
Vimu6g00694 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 211 IPR036638 GO:0046983
Vimu6g00694 328 Gene3D - 135 208 IPR036638 GO:0046983
Vimu6g00694 328 Coils Coil 182 209 - -
Vimu6g00694 328 MobiDBLite consensus disorder prediction 28 86 - -
Vimu6g00694 328 PANTHER BHLH TRANSCRIPTION FACTOR 23 318 - -
Vimu6g00694 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Vimu6g00694 328 SMART finulus 149 198 IPR011598 GO:0046983
Vimu6g00694 328 MobiDBLite consensus disorder prediction 100 146 - -
Vimu6g00694 328 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00694 Vimu-Chr6 8055674 8058067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00694 8 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.045 1.39e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g00694 HLH 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00694 - - gmx:100818334 358.221