Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00671 ATGGGGTCTATGAACTTGTTGGGGTTTTCTCTCTCTCCTCAAGAACACCCTTCTAGTCAAGATCACTCTCAAACAGCACCTTCCCGTTTTGGCTTCAACCCTGCTGGAATCTCAAGCACTGATGTTGCAGGAAACTGTTTTGATCTCACTTCTCACTCAACTCCTCAACTAGTCAATCTTCCTTCTTATGACATATATGAAGCATTTCACAGAAACAATGACATTCACAACACTGCTCAAGATTGGAAAGAGAACTACAACAGTCAAAACTTGCTGTTAGGAACTTCATGCAGTAACCAAAACATGAACAACGATCAACATCAACATCAGCAACAGCAACCAAAGCTTGAAAACTTTCTGGGAGGACATTCGTTTGGAGAACATGACCAAACCTACGGTGGTAACACAGCCTCAACAGATTACATGTTTCCAAGTCAGCCAGTGGCCACCAGTGGTGGCGGCAGTAGCACAAACAATAGTAACTCCATAGGGTTATCCATGATAAAGACATGGCTGAGGAACCAACCACCACCCTCAGAAAACAACAACAATGAAAGTGGTGGGAACAGTGGAAGCAGTGTGCAGACTCTCTCACTTTCTATGAGTACTGGTTCACAATCCAACACTTCACTTCCTGTTCTCTCTGCAAATGTGGAAAATGGAGAGAGTTCTTCAGATAACAAACAACCACCAACCACTGCTGCACTTGATACCACCCCAACAGGAGCCACTGAATCTGCACCCAGAAAGTCCATTGACACCTTTGGACAAAGAACTTCTATATACCGTGGTGTAACAAGGCATAGGTGGACTGGGAGATACGAGGCTCATCTGTGGGATAATAGCTGCAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGGAGGCTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGAACAACTACAACAACAAATTTTCCAGTTGTGTTGTTTGCACACATTGCTTTATACAAAGTTGGTATTGGTATTAACGAAACAAGTAATGGCATCATGATTAGCCACTATGAGAAGGAGGTGGAAGAAATGAAGCACATGACCAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAGAGCAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACAAGACACCATCAACATGGTAGATGGCAGGCAAGGATTGGGAGAGTTGCAGGCAATAAGGATCTTTACTTGGGAACATTCAGCACTCAAGAAGAAGCAGCAGAGGCTTATGATGTTGCGGCCATAAAATTCCGAGGACTGAGTGCTGTTACGAACTTTGACATGAGCAGATACGACGTGAAGAGCATACTTGAGAGCACTACTTTGCCGATTGGTGGTGCCGCCAAGCGTTTGAAGGACATGGAACAGGTGGAACTGAACGTGGAAGCTCATAGAACAGACCAAGAAGATCATCATAGCAGCATCTTGAACTCTCACCTTACTCAAGGTATCAGCAACAACTATGCAGGAGGAACAGCAACAACTCATCATAACTGGCACAATGGTCTTTCATTCCACCAACCTCAACCTTGCACCGCCATGCACTACCCTTATGGACAGAGATTATGGTGCAAGCAAGAACAGCACGACAATTCTGATACCTCTCATCCTTTGTCTTATCCTGAGATTCATCAACTACAGCTAGGGAATAACGGCACACACAACTTTTTCCACGCAAATTCCGGGTTGCACCCTATCATGAACATGGATTCTGCTTCCATTGACAATAGCTCTTCGTCTAACTCGGTGGTTTATGATGGTTATGGAGGTGGTGGTGGGGGCTATGTGATACCTATTGGGACTGGTACTGTTGTTGCAAGTGAAGGTGATCATAATAATCAAAGAGGAAGTAATGGTTTTGGTGATAATGAGATGAAGGTACTTGGTTATGAAGGTGTTTATGGATCGAATGATGCTACTTATCATGCTCATGCACACGCAAGGAACTTTTATTATCTTTCCCAACAGCAATCAGCTTCTGTAGATGCAGTGAAGGGTAGTGCATATGATCAAGGCTCTGCATGCAACACTTGGGTTCCAACTGCAATTCCAACTCTTGCACCTAGGTCAACCAGCATGACTCTCTGCCATGGTGCTCCACCCTTCTCGTTATTGCATGAATAG 2169 0.4454 MGSMNLLGFSLSPQEHPSSQDHSQTAPSRFGFNPAGISSTDVAGNCFDLTSHSTPQLVNLPSYDIYEAFHRNNDIHNTAQDWKENYNSQNLLLGTSCSNQNMNNDQHQHQQQQPKLENFLGGHSFGEHDQTYGGNTASTDYMFPSQPVATSGGGSSTNNSNSIGLSMIKTWLRNQPPPSENNNNESGGNSGSSVQTLSLSMSTGSQSNTSLPVLSANVENGESSSDNKQPPTTAALDTTPTGATESAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPVVLFAHIALYKVGIGINETSNGIMISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELNVEAHRTDQEDHHSSILNSHLTQGISNNYAGGTATTHHNWHNGLSFHQPQPCTAMHYPYGQRLWCKQEQHDNSDTSHPLSYPEIHQLQLGNNGTHNFFHANSGLHPIMNMDSASIDNSSSSNSVVYDGYGGGGGGYVIPIGTGTVVASEGDHNNQRGSNGFGDNEMKVLGYEGVYGSNDATYHAHAHARNFYYLSQQQSASVDAVKGSAYDQGSACNTWVPTAIPTLAPRSTSMTLCHGAPPFSLLHE 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00671 722 Pfam AP2 domain 384 434 IPR001471 GO:0003700|GO:0006355
Vimu6g00671 722 Pfam AP2 domain 261 316 IPR001471 GO:0003700|GO:0006355
Vimu6g00671 722 MobiDBLite consensus disorder prediction 129 253 - -
Vimu6g00671 722 FunFam AP2-like ethylene-responsive transcription factor 383 444 - -
Vimu6g00671 722 CDD AP2 260 326 IPR001471 GO:0003700|GO:0006355
Vimu6g00671 722 MobiDBLite consensus disorder prediction 1 34 - -
Vimu6g00671 722 MobiDBLite consensus disorder prediction 118 253 - -
Vimu6g00671 722 ProSiteProfiles AP2/ERF domain profile. 384 442 IPR001471 GO:0003700|GO:0006355
Vimu6g00671 722 CDD AP2 383 444 IPR001471 GO:0003700|GO:0006355
Vimu6g00671 722 SUPERFAMILY DNA-binding domain 383 444 IPR016177 GO:0003677
Vimu6g00671 722 SUPERFAMILY DNA-binding domain 260 325 IPR016177 GO:0003677
Vimu6g00671 722 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 539 - -
Vimu6g00671 722 Gene3D AP2/ERF domain 384 444 IPR036955 GO:0003700|GO:0006355
Vimu6g00671 722 Gene3D AP2/ERF domain 261 326 IPR036955 GO:0003700|GO:0006355
Vimu6g00671 722 ProSiteProfiles AP2/ERF domain profile. 261 324 IPR001471 GO:0003700|GO:0006355
Vimu6g00671 722 SMART rav1_2 384 448 IPR001471 GO:0003700|GO:0006355
Vimu6g00671 722 SMART rav1_2 261 330 IPR001471 GO:0003700|GO:0006355
Vimu6g00671 722 FunFam AP2-like ethylene-responsive transcription factor ANT 260 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00671 Vimu-Chr6 7854251 7858368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00671 114 469 AP2-EREBP Transcription Factor Family AT5G17430 60.167 4.31e-128 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vimu6g00671 AP2 3.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00671 K09285 - gmx:100797584 1083.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00671 6 7854251 7858368 Vimu6g00671 6 7854251 7858368 ECH