Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00650 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCCCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTATTGCTAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTTTGAGGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAAGGGGACCGCCATCCTTACTCCATAATAGAGTGTGAGCCTAAGCGTGAAGTCATCCTACCATCTGTAATCTATATACAAAAGATTTTGCGGCGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTCATGCGAAGATTCCTCCAGTCCTTGGAGCTTTTCGAGGAAAATGAGAGGAAGAAGTTGGCAATCTTCACAGCCCTCGCATTCTCCCAGAAGCTGTCTGGTCTCCCACCAGAAACTGTTCTCCAACCACTGCTTAAAGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTTATGACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTGAAACGGGGAAAAGTAGAGGATAATCTTTTGGACTTTTTCCCCCCTACAAAAAGATCCAATGAAGCTTTCTCTGAGCATTTCAGCAAGGAAGGACTGGTGGCCTTGGTGGAATATAATGAAAAGAAAATTTTTGAGGTGAAATTGAAGGAAATGAAAGCTGCTTTAACAACACAGATAACAGAGGAGGCTGATACATCTGAAGTCATTGAGACAGTGAAGTTGCGGGTTAGGGATGCTAAATTGCCAGACATTGAGGTGGTGCGGGTAGTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCAGGGAAAAATCAGCAACAGAATGCAAACGCAGCCCTCCGACAGTTTCAAAGAACTGCTGATGAGCCAATGGATTTGTGTAATTACAGGCTAGCTGGTGGGAAACTTGAGCTTGAACTGATGTACAAAGTACAAATGCAATGCTATGAGGATGCTAAACTTATGAAGCTGTTCCCTGAGATTGTTAGATCTCTCTATGACCAGGATGTACTGGCTGAAGATACAATTCTTCATTGGTTCCGAAAAGGAACAAACCCCAAGGGCAGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGCTGAAGAGGAGGAGTAA 1248 0.4463 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGDRHPYSIIECEPKREVILPSVIYIQKILRRRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVLQPLLKDNLVAKGLVLSFMTDFFKEYLIDNSLDDLISILKRGKVEDNLLDFFPPTKRSNEAFSEHFSKEGLVALVEYNEKKIFEVKLKEMKAALTTQITEEADTSEVIETVKLRVRDAKLPDIEVVRVVWDVLMDAVQWSGKNQQQNANAALRQFQRTADEPMDLCNYRLAGGKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNPKGRQTFVKALEPFVNWLEEAEEEE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00650 415 Coils Coil 121 141 - -
Vimu6g00650 415 Pfam eIF4-gamma/eIF5/eIF2-epsilon 342 415 IPR003307 GO:0005515
Vimu6g00650 415 Gene3D - 253 411 - -
Vimu6g00650 415 FunFam ARM repeat superfamily protein 243 415 - -
Vimu6g00650 415 SUPERFAMILY ARM repeat 252 412 IPR016024 -
Vimu6g00650 415 SMART 542_3 329 414 IPR003307 GO:0005515
Vimu6g00650 415 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 2 415 - -
Vimu6g00650 415 ProSiteProfiles W2 domain profile. 246 415 IPR003307 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00650 300 411 Eukaryotic Initiation Factors Gene Family AT2G34970 29.825 3.28e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00650 - - gmx:100782537 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00650 6 7637453 7641573 Vimu6g00650 6 7637453 7641573 ECH