Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00643 ATGAGAGAAAATGATCTAAATGATGATCAGAACAACCTTTGTAATGAAGAAACAGAATCAAAAGGTGCAAAAAGAAGCCTGGCTGAGAGAAGAGGGTTCAATTCAGATGCTGCAAAAATCAATACAGCACTGTTTTGTAGTGACACTACAACAGACCCTTCCCCTTCTCCTGCTACTCATCTCACCATTCCTCCTGGAATCAGTCCCACTGCATTGTTGGATTCTCCTGTTATGCTTCCAAATTCTCAGGCAACACCATTATCTCCCACCACGGGGAGTTTCTTCGTGATGTCAACTCTTCCTCCCTATTCTGCTCCTCTAAATCAGGTTTCTAGTAATTTCCAGTCGGTAAAAGGAGGGAATAGAGAAAGCCAACTACCTCCTCAAGTTCAGTCACCATTAGATTTTTCATTCCCATCAGATTTTTCAAAAGGGCATTCTATGAAAAATAGTGAAGTAAATTCATACAATGATATGAAAATGGTAAATGATAAGATTGTTAATGGCAATAATGTTGAGAAGCCAATCTCTGGCTCTGAAGAAGTAAGCGATGAAAGTGGTGTGCCGAAAAACGGTATCAATAGTGAGGATATTGTAGGACAACCTGCTTCAGAAGGAGAACTGAAAGAAGCATCTCATGCAACAGGAGTGGTAAGAACCTCAGAGGATGGTTATAATTGGAGAAAATATGGACAAAAACAGGTAAAAGGCAGTGAGTATCCCAGAAGCTATTATAAATGTACACAACCTAATTGTCTGGTCAAGAAAAAGGTGGAACGATCACATGATGGTCAAATTACAGAAATCATCTACAAGGGTAATCATAACCATGTAAAACCACACTCTAGTCATAGAGGATCTGCACTTTCTACAGATGAGGTTTCAAACATGGCTGAAGAAGGTGCATTGGCTAAAGTCGATGGTGGGTTCATGTGGAGAAATATTCAGTCAGGAATAAAAGATTCAAAAAACAGTTTAGATTGGAAGGCTGATGGTCAGGAAAGGACATCACCAACTTCTGGTGTGACTGATATTTCAGATCCTATATCAACCAACAAAGCTAAATCTCTATCCATGTTTGAATCGGAGGAGACTCCAGAGCTTTCTTCTACACTTGCTAGTCATGATATGGAAGAAGATGGAGCAACTCAAGCAATTGTTGAAGATGAAGTTGAGAATGATGAATCAGAACCTAAAAGAAGAAAGAAAGAGAACTATGCAGCTGAGTCAAATTTGCCCCCTAGGTCTGTTCGTGAGCCAAGAGTGGTAGTCCAAATTGAGAGTGATGTGGACATACTTGATGATGGTTACCGCTGGCGTAAGTATGGACAGAAGGTTGTCAAAGGAAATCCAAATCCTAGGAGCTACTACAAATGCACAAGTGCTGGGTGTATGGTAAGGAAACATGTGGAAAGGGCCTCACACAATCTAAAATATGTTCTTACTACTTATGAGGGAAAACACAATCATGATGTGCCCACTGCAAGAACCAACAATCAGATAAACTCAAGTGATGGTGGTTTACACCCCAATGGTGTCAATGGGCAAGTGGCTCTTGCTATAGCAGGGAGTGCTGGCATTAAGCCTGAGACTCATCAAACTCTTGCACATCATTTTGCTAGAAAACCTGAATTCAGCAATGATTTTCTCAGGCCTAGTTTGATTGGAAGTTTCAGCACTGACATGAAGTTTCCTCCTTCTTCCCTTTGCCAAATGAAGTATCCTTCCTTGAATAACTCCATGCCTTATAGCTCCTATGGACTGAACCCTGATCGTTGTGTTGCACCTCAATCTGGATCCATTTCCTCAATGTTCCCTGATTTTCCAATGCCACTACCATTGAATCTTCCCTCATCTGGAAAATTTTCAATTGCTGGACTTAACTTTAACTGTGCCAAACCAATAAGTCCTATTCAATCTTTCCTTTCTGGACAGCAAGTGAAGGACATTGATACAGTATTTCTGAGGCCTAAGCAGGAACAGAAGGATGATACTATATATGGCTCCTGCATCCCCTCACTAGATCCAAATGCTTCACTCTCTTCTTCTTCTTCAGCACCACCATCCATTTATCAACGAGTCATGCAAAATTTCCCTTCATAA 2103 0.4075 MRENDLNDDQNNLCNEETESKGAKRSLAERRGFNSDAAKINTALFCSDTTTDPSPSPATHLTIPPGISPTALLDSPVMLPNSQATPLSPTTGSFFVMSTLPPYSAPLNQVSSNFQSVKGGNRESQLPPQVQSPLDFSFPSDFSKGHSMKNSEVNSYNDMKMVNDKIVNGNNVEKPISGSEEVSDESGVPKNGINSEDIVGQPASEGELKEASHATGVVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCLVKKKVERSHDGQITEIIYKGNHNHVKPHSSHRGSALSTDEVSNMAEEGALAKVDGGFMWRNIQSGIKDSKNSLDWKADGQERTSPTSGVTDISDPISTNKAKSLSMFESEETPELSSTLASHDMEEDGATQAIVEDEVENDESEPKRRKKENYAAESNLPPRSVREPRVVVQIESDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCMVRKHVERASHNLKYVLTTYEGKHNHDVPTARTNNQINSSDGGLHPNGVNGQVALAIAGSAGIKPETHQTLAHHFARKPEFSNDFLRPSLIGSFSTDMKFPPSSLCQMKYPSLNNSMPYSSYGLNPDRCVAPQSGSISSMFPDFPMPLPLNLPSSGKFSIAGLNFNCAKPISPIQSFLSGQQVKDIDTVFLRPKQEQKDDTIYGSCIPSLDPNASLSSSSSAPPSIYQRVMQNFPS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00643 700 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 73 511 IPR044810 GO:0003700
Vimu6g00643 700 MobiDBLite consensus disorder prediction 393 408 - -
Vimu6g00643 700 MobiDBLite consensus disorder prediction 322 414 - -
Vimu6g00643 700 MobiDBLite consensus disorder prediction 331 372 - -
Vimu6g00643 700 SUPERFAMILY WRKY DNA-binding domain 219 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00643 700 MobiDBLite consensus disorder prediction 1 32 - -
Vimu6g00643 700 MobiDBLite consensus disorder prediction 46 63 - -
Vimu6g00643 700 MobiDBLite consensus disorder prediction 46 67 - -
Vimu6g00643 700 FunFam WRKY transcription factor 209 281 - -
Vimu6g00643 700 ProSiteProfiles WRKY domain profile. 428 493 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00643 700 Pfam WRKY DNA -binding domain 222 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00643 700 Pfam WRKY DNA -binding domain 434 490 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00643 700 MobiDBLite consensus disorder prediction 173 217 - -
Vimu6g00643 700 ProSiteProfiles WRKY domain profile. 216 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00643 700 Gene3D WRKY domain 209 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00643 700 SMART WRKY_cls 221 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00643 700 SMART WRKY_cls 433 492 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00643 700 SUPERFAMILY WRKY DNA-binding domain 426 493 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00643 700 FunFam WRKY transcription factor 57 419 493 - -
Vimu6g00643 700 Gene3D WRKY domain 420 486 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00643 Vimu-Chr6 7590187 7594027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00643 22 496 WRKY Transcription Factor Family AT5G56270 40.741 3.67e-90 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g00643 WRKY 7.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00643 K18835 - gmx:100800211 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00643 6 7590187 7594027 Vimu6g00643 6 7590187 7594027 ECH