Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00641 ATGGGGTTGATTGTGGAGGTCGAGAACGGCGACGACAACGACGCCGTTCTGGTTCCGCCCCCTAACTTCGCCATGGTCGAGGACTGCATTTTCCGATCCAGCTTTCCTACCTCCTCCAATTTCCCCTTTCTCCAAACCCTAAACCTTCGCTCCATCATCGTGAAACTTAAATACGACGTTGCGAATTGGTGCAGATACCTGTGCCCCGAGCCTTATCCTGAGGAAAATCTAGAGTTCCTTCGGTCGCAGAATATTCGGCTCTTTCAATTTGCAATTGAGGGGAAAACGGATATTTCTACCCCTATTCTCAAGGATTCTGTCATGGATGCACTGAAGGTTTTGATTGATGTGAGAAATCACCCTGTTTTGATCCACTGCAAGCGAGGAAAGGTATTAAAAGATGCACAAACTGTAAATTTAGGGTGTAATTGGTGTTTATCTTCTGTATTTGAGGAGTACCAACGATTTGCTGGTGCTAAATCCAGGACAATGGACTTAACATTTATAGAAATGTTTGACATTCTAAGCCTGAGCCAGTGCCTTTACAGCATAATCTACCAGTACCATGGATATGGTTCGAAAAAGCGTCGGTTGTTGTACAAAGAAGAGAATTTACAGAAGCCCCGATTGACATCATTTTAG 642 0.4424 MGLIVEVENGDDNDAVLVPPPNFAMVEDCIFRSSFPTSSNFPFLQTLNLRSIIVKLKYDVANWCRYLCPEPYPEENLEFLRSQNIRLFQFAIEGKTDISTPILKDSVMDALKVLIDVRNHPVLIHCKRGKVLKDAQTVNLGCNWCLSSVFEEYQRFAGAKSRTMDLTFIEMFDILSLSQCLYSIIYQYHGYGSKKRRLLYKEENLQKPRLTSF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00641 213 Gene3D Protein tyrosine phosphatase superfamily 16 176 IPR029021 -
Vimu6g00641 213 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 174 IPR029021 -
Vimu6g00641 213 Pfam Tyrosine phosphatase family 17 174 IPR004861 -
Vimu6g00641 213 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Vimu6g00641 213 PRINTS Plant and fungal dual specificity phosphatase signature 102 116 IPR020428 GO:0016791
Vimu6g00641 213 PANTHER TYROSINE-PROTEIN PHOSPHATASE 14 183 - -
Vimu6g00641 213 FunFam Tyrosine phosphatase, putative 16 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00641 Vimu-Chr6 7568623 7570526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00641 1 209 Protein tyrosine phosphatase (PTP) family AT3G02800 60.748 1.32e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00641 K18045 - gmx:100787713 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00641 6 7568623 7570526 Vimu6g00641 6 7568623 7570526 ECH