Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00636 ATGGAATCTGGACCTTATCCCGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGGACCGGCCTTTGTAGATTTGGAGCAACATGTAGATTTAATCATCCTCCTAACAGAAAGCTGGCTATTGCTGCTGCACGAATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGGCATCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCTCTCCGCCCAAATGAGCCTGACTGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCCCAACCAAACAATATGGTGCTTTCCATGAGAAGTTCTCCTGTTTATCCTAGTGTCCAATCTCCAACTACACCAGGAATTACAAATTGGCCCAGTTCATCGTATATTCCTAGCCCTCGTTGGCAAAGTCCTTCAAGTTATGCTCCTTTAATTCTACCTCAGGGAATGGTTTCAGTTCCTGGCTGGAGTGCATACAGTGTAAGCTCGTACATTCTTTTATAA 567 0.4374 MESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQASTCRFHHPRDKAGIAGRVALNILGYPLRPNEPDCAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPSVQSPTTPGITNWPSSSYIPSPRWQSPSSYAPLILPQGMVSVPGWSAYSVSSYILL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00636 188 SUPERFAMILY CCCH zinc finger 14 37 IPR036855 GO:0046872
Vimu6g00636 188 Gene3D - 8 77 - -
Vimu6g00636 188 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Vimu6g00636 188 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 11 36 IPR000571 GO:0046872
Vimu6g00636 188 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Vimu6g00636 188 Gene3D - 78 126 - -
Vimu6g00636 188 ProSiteProfiles Zinc finger C3H1-type profile. 10 37 IPR000571 GO:0046872
Vimu6g00636 188 PANTHER PROTEIN PHOSPHATASE RELATED 2 182 - -
Vimu6g00636 188 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Vimu6g00636 188 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Vimu6g00636 188 SMART c3hfinal6 9 36 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00636 Vimu-Chr6 7506872 7509993 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00636 1 181 C2H2 Transcription Factor Family AT3G02830 63.212 5.07e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu6g00636 zf-CCCH 3.8e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00636 - - gmx:100786261 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00636 6 7506872 7509993 Vimu6g00636 6 7506872 7509993 ECH