Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00635 ATGCTTGGTCAAATGGGATCAGATAGTTCACAACAAACAATGGGAAATGGCCAAAGCTATGGAACCAATCGGCAAAGTGAACCAACCAATGCAGGATCCCAGGGAGCATATTCTCAATTTCGCTCTGGCTCTGTTCCTGTAGGTTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAACCAGAATGTCAATTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGCCTTCCTTTACGTCCTGTGAGTTGA 333 0.4505 MLGQMGSDSSQQTMGNGQSYGTNRQSEPTNAGSQGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPVS 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00635 110 Gene3D - 37 97 - -
Vimu6g00635 110 PANTHER PROTEIN PHOSPHATASE RELATED 12 108 - -
Vimu6g00635 110 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 88 IPR000571 GO:0046872
Vimu6g00635 110 SUPERFAMILY CCCH zinc finger 64 90 IPR036855 GO:0046872
Vimu6g00635 110 MobiDBLite consensus disorder prediction 1 39 - -
Vimu6g00635 110 ProSiteProfiles Zinc finger C3H1-type profile. 61 89 IPR000571 GO:0046872
Vimu6g00635 110 SMART c3hfinal6 61 88 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00635 Vimu-Chr6 7503522 7506844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00635 58 88 C2H2 Transcription Factor Family AT5G16540 41.935 1.41e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu6g00635 zf-CCCH 9.6e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00635 - - gmx:100786261 221.861