Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00625 ATGGTTTCCCTGTCAACCACCACCCCTTTTCTACCCTTCACTGCACAAAACGCTTCCACCAGAATCCTTTCTCCCAACACCTTCCGTTACACCAAGCACCGTCATAGGGATCACAGGAAGGTTGTGTGCGCCTGCATCGCACCTCCGCAGAACTTCAAGAGCCAGGACTCTTCCCCTGTTAATTTCAATGGTTTGCACAAATCAGAACAGCTGAGCGCGGCGCGGGATCAGGATGATGATTCTGATGTTCTTATTGAGTGTAAAGATGTGTACAAATCTTTCGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATCAGGCACGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGTAAATCTACAGTTTTGAAGATTATAGCAGGACTTCTTGCTCCGGATAAGGGGGAAGTTTACATTCGAGGAAAAAAGAGGGTTGGTTTAGTAAGCGATGATAACCTATCTGGTCTTCGGATTGGATTAGTTTTCCAAAGTGCCGCACTCTTTGATTCTTTGTCTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCGAGTATGTCTGAGGACCAGATATCAGAGCTTGTCAAGGAAACCTTGGCTGCAGTTGGATTGAAGGGAGTTGAAGATCGGTTGCCTTCTGAATTATCAGGTGGGATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATCTGTGACACCACAAAGGAATCAATTGAGCCAGAGGTGCTTTTATATGACGAACCAACTGCTGGACTTGATCCAATTGCATCTACTGTTGTTGAGGATCTGATTCGCTCAGTGCACATAAAAGGACGAGATGCTCGTGGAAAACCTGGGAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTGTTGTTTCTACACAAGGGAACGATTGTTTGGGAAGGAATGACTCATGAATTTACAACTACAACAAATCCAATTGTTCAGCAGTTTGCATCCGGCAGCCTAGATGGTCCTATAAAATATTAG 1038 0.4364 MVSLSTTTPFLPFTAQNASTRILSPNTFRYTKHRHRDHRKVVCACIAPPQNFKSQDSSPVNFNGLHKSEQLSAARDQDDDSDVLIECKDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDNLSGLRIGLVFQSAALFDSLSVRENVGFLLYEHSSMSEDQISELVKETLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGTIVWEGMTHEFTTTTNPIVQQFASGSLDGPIKY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00625 345 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 85 336 IPR003439 GO:0005524
Vimu6g00625 345 SMART AAA_5 109 313 IPR003593 GO:0016887
Vimu6g00625 345 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 13 345 - -
Vimu6g00625 345 Pfam ABC transporter 100 255 IPR003439 GO:0005524
Vimu6g00625 345 CDD ABC_Org_Solvent_Resistant 85 334 - -
Vimu6g00625 345 Gene3D - 71 337 IPR027417 -
Vimu6g00625 345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 325 IPR027417 -
Vimu6g00625 345 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00625 Vimu-Chr6 7423952 7431631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00625 84 314 Calmodulin-binding Proteins AT2G36910 30.041 8.01e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00625 - - vum:124836515 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00625 6 7423952 7431631 Vimu6g00625 6 7423952 7431631 ECH