Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00607 ATGGAGCTTCTTCACAACCTCAACATTCTCACCACAGTTCTGCTCCTATGCATGTTCCCTCACTCACTCAACTGCCAACAAATATACCTCAATGACACTGTCTATGACTGTTCTGACAACCCTTCTGCACCAAAAGGCTACCTTTGCAATGGCCTTCGAAAGTCATGCACTTCCTTCTTACTTTTCAGGTCCAAACCTCCCTACGATAGCCCTGTCAGAATTGCCTACCTTTTTGGCTCTGAGGCATCTACCATAGCCTCAATCAACAACATCTCAAGAAATGACAAGATTGCTTCTAACAAGACAATCATTGTTCCTGTATTCTGTTCATGTTCAGGAAACATCTACCAGCACAACACACCATACACTGCCAGCAAGAATGACACCTATTATCAGTTGGTAACCGAAACCTTCCAAGGTCTCACTACCTGTCAATCAATGATGGGTCAGAATTACTATGCAGCAACCAAAATTGCAATTGGTGCTGAGCTCACTGTTCCCTTGTTATGTGCTTGTCCAACTGAAAATCAGACAGCAAGAGGGGTCACCTCCTTGTTGGTTTACTTGGTGAACTATGGTGACACTATTGAATCCATAGGAAAGGCTTATGGTGTGGATGAACAAAGTATGCTTGAGGCCAATGAGTTGGCTGTGCCACAAAGTGAAAACATAAACATGGATCTCCTTTCCTTGACACCTCTTTTAGTTCCTCTAATAGGGAAGAGCTGCAAAGAGAACCCAGATAAATTCTATTGTAAATGTTATCAAGCACCGGATGGAAGCTCTAAGGGGCCCTTCTGTGATGAGTCTGATGGTCAGAAATTCCCTGCCAAGTTGGTAGCCGCTTTAGGAGCAGGACTTGGTGTAGGCTTTCTGTGTTTGTTTCTTCTGGGATACAAATCATATCAGTACATACAGAAGAAGAGAGAAAGTATCAGAAAAGAAAACCTTTTCAGGCAAAATGGTGGCTACTTGTTACAGGAGAAGCTCTCATCTTACGGAAATGGAGAAATGGCAAAGCTTTTTACAGCTGAGGAGCTACAAAGAGCAACAGATAGCTATAACAGGAGTAGGTTTCTTGGTCAGGGTGGCTATGGCACAGTATACAAAGGAATGTTACCTGATGGAACCATAGTTGCAGTTAAAAGGTCCAAAGAAATTGAAAGGAACCAGATAGAGACTTTTGTGAATGAAGTGGTGATTCTATCACAGATCAACCACAGGAACATTGTCAAACTATTAGGTTGTTGTCTTGAGACAGAAACTCCTTTACTAGTCTATGAATTCATTCCAAACGGAACACTCTCTCACCATATCCACAGGAGAGACAATGAGCCCTCCCTTTCATGGGAGAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCAGCTTCTATTCCCATTTTCCATAGAGACATCAAACCTACCAACATACTTTTAGACAGCAACTTCAGTGCCAAAGTGTCTGATTTTGGAACATCAAGATCAGTGCCACAAGATAAGACTCACTTGACCACAGCTATAGGAGGAACTTTTGGGTACATTGACCCTGAGTATTTTCAGTCTAGTAAGTTTTCAGATAAAAGTGATGTGTACAGTTTTGGGGTAGTACTTGTAGAGCTGATAAGTGGGAGAAAGCCAATTTCATTCTTAGAGGAAGATGAGGGTCAGAATCTGGTTGCAGAGTTTCTTTCTCTGATGAAAGAGAACCAAGTTTATGAAATTTTAGATGGAAGGGTGGCTAAGGAAGCAATGAAAGATGACATTCTTGCCATTGGAAACCTTGCAATGAGATGCTTGAGACTTAATGGGAGGAAAAGGCCAACCATGAAGGAGGTTTCAATGGAATTAGAAGCATTGAGAAAGGTGCAAAGTTCCTTACAGATCAAACATGATCATGAGCACAAAACTAGTGATATGATTCAAGAGTGCACAGAAGAAAGCATGTCACTGTCCTTACAACTAGAGTCTACATCCTTATAG 2004 0.4187 MELLHNLNILTTVLLLCMFPHSLNCQQIYLNDTVYDCSDNPSAPKGYLCNGLRKSCTSFLLFRSKPPYDSPVRIAYLFGSEASTIASINNISRNDKIASNKTIIVPVFCSCSGNIYQHNTPYTASKNDTYYQLVTETFQGLTTCQSMMGQNYYAATKIAIGAELTVPLLCACPTENQTARGVTSLLVYLVNYGDTIESIGKAYGVDEQSMLEANELAVPQSENINMDLLSLTPLLVPLIGKSCKENPDKFYCKCYQAPDGSSKGPFCDESDGQKFPAKLVAALGAGLGVGFLCLFLLGYKSYQYIQKKRESIRKENLFRQNGGYLLQEKLSSYGNGEMAKLFTAEELQRATDSYNRSRFLGQGGYGTVYKGMLPDGTIVAVKRSKEIERNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSHHIHRRDNEPSLSWESRLRIACEVAGAVAYMHFAASIPIFHRDIKPTNILLDSNFSAKVSDFGTSRSVPQDKTHLTTAIGGTFGYIDPEYFQSSKFSDKSDVYSFGVVLVELISGRKPISFLEEDEGQNLVAEFLSLMKENQVYEILDGRVAKEAMKDDILAIGNLAMRCLRLNGRKRPTMKEVSMELEALRKVQSSLQIKHDHEHKTSDMIQECTEESMSLSLQLESTSL 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00607 667 Gene3D Phosphorylase Kinase; domain 1 327 429 - -
Vimu6g00607 667 Gene3D Transferase(Phosphotransferase) domain 1 430 653 - -
Vimu6g00607 667 Pfam LysM domain 188 220 IPR018392 -
Vimu6g00607 667 Pfam LysM domain 69 106 IPR018392 -
Vimu6g00607 667 ProSiteProfiles Protein kinase domain profile. 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00607 667 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 58 637 IPR045274 GO:0007166
Vimu6g00607 667 Pfam Protein tyrosine and serine/threonine kinase 357 624 IPR001245 GO:0004672|GO:0006468
Vimu6g00607 667 SMART serkin_6 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00607 667 FunFam Wall-associated receptor kinase 2 325 429 - -
Vimu6g00607 667 SUPERFAMILY Protein kinase-like (PK-like) 337 624 IPR011009 -
Vimu6g00607 667 FunFam Wall-associated receptor kinase 2 430 647 - -
Vimu6g00607 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Vimu6g00607 667 CDD LysM 187 228 IPR018392 -
Vimu6g00607 667 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Vimu6g00607 667 CDD STKc_IRAK 360 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00607 Vimu-Chr6 7281014 7283404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00607 274 628 Receptor kinase-like Gene Family AT1G16130 56.863 2.06e-141 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu6g00607 PK_Tyr_Ser-Thr 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00607 - - gmx:100795455 1164.83