Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00604 ATGTCATCAGTGTCTCCTTCTCCCTCCGTCTCCTTCTCCTACGGGCCACCTTCGAACACCAACAACAATGGACTAGACATATTCACCAAGGTCTTCCTGTTGTTCATCTTTTTCACTCTCTTTGTTCGTGTCTGTTACGTGTACATGAACATGCGACGAGAACAAAACGGCAACGACAACGTAAGCAACAGCATCGCTTCCATGACCCATAACGATCAAAATGATAACCTCACCGGGGTACCCTATGACGTCATAAAGTCCTACCGCACTTTCCCTTACAGCAAAACCGATAGTGTTGTGGGAACAACATGCGACCATGACACCACGTGCGCCATATGTATTGAGGATTACGAGGAATCGGAGATGCTGAGGGTGTTGCCGCAATGCCGCCACTACTTTCACCGAGACTGCGTCGACGCATGGCTGAAGGTTAATGCCACGTGTCCCGTTTGCAGGAACTCGCTCATGGAAACTACGAGCCATATTAATATTAACGATAACAGTGTCATTAACAATGCCTTAGAACGTGTCTAA 534 0.4757 MSSVSPSPSVSFSYGPPSNTNNNGLDIFTKVFLLFIFFTLFVRVCYVYMNMRREQNGNDNVSNSIASMTHNDQNDNLTGVPYDVIKSYRTFPYSKTDSVVGTTCDHDTTCAICIEDYEESEMLRVLPQCRHYFHRDCVDAWLKVNATCPVCRNSLMETTSHININDNSVINNALERV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00604 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 158 IPR013083 -
Vimu6g00604 177 SUPERFAMILY RING/U-box 109 163 - -
Vimu6g00604 177 SMART ring_2 110 151 IPR001841 -
Vimu6g00604 177 PANTHER RING-H2 FINGER PROTEIN ATL67 24 161 IPR044289 GO:0016567|GO:0016740
Vimu6g00604 177 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Vimu6g00604 177 CDD RING-H2_PA-TM-RING 109 152 - -
Vimu6g00604 177 Pfam Ring finger domain 109 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00604 Vimu-Chr6 7257033 7257566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00604 1 166 C3H Transcription Factor Family AT5G07040 29.341 3.48e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00604 - - vun:114182932 301.212