Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00603 ATGCGACTTCTCCAGTATTTGTCAGCTGAAGCCCTCACCCACCCTTTACCCTTCTCAAATGGAGAATCTTTTTTCTCTTCTTCTTTCTGTTCTTCTTCTTCTTCTTCTTCTTCCTTCCCTTTCTCCATGTCCCCTTCAATTCCCTCTCCTCACATCACCCACCTTGGCCTTGGCTACTCCATCGCCATAGCCCTCGCCTTCCTCTTCCTCCTCTCTACCCTACTCCTCTCCTCCTATCTCTGCTGCCGCGCCACCCGACACCGCACCCAAACAACCGCCGTCACAACCGCCTCCGCCAACCCCTCCGACGGCGTTGTCCTGCCACGTGTCATCTTCGTGGCGGAGGACGACGACGACGACGACGAGGCCAGCGTTGCGCTGGGCCTCGACCAGAGCGTTATTAATTCCTACCCCAGGTTCCAGTTCGACAGGGACAACGCGCGGAATAGTAACGGGAATAACAACACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTAAGGATGATGCCCGAGTGCCGCCATTTCTTCCACCTCTGTTGTCTCGATTCCTGGCTCAGACTCAGAGGCACCTGCCCCGTTTGCCGCAACTCGCCCCTCCCGACGCCGCTCTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCAGTACGCCGCCGATAGAAGGCGAAGTAGGTGA 687 0.5706 MRLLQYLSAEALTHPLPFSNGESFFSSSFCSSSSSSSSFPFSMSPSIPSPHITHLGLGYSIAIALAFLFLLSTLLLSSYLCCRATRHRTQTTAVTTASANPSDGVVLPRVIFVAEDDDDDDEASVALGLDQSVINSYPRFQFDRDNARNSNGNNNTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLRLRGTCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRSR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00603 228 SUPERFAMILY RING/U-box 156 204 - -
Vimu6g00603 228 PANTHER RING-H2 FINGER PROTEIN ATL67 40 227 IPR044289 GO:0016567|GO:0016740
Vimu6g00603 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 203 IPR013083 -
Vimu6g00603 228 SMART ring_2 157 198 IPR001841 -
Vimu6g00603 228 Pfam Ring finger domain 155 199 IPR001841 -
Vimu6g00603 228 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00603 Vimu-Chr6 7248916 7251772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00603 43 218 C3H Transcription Factor Family AT5G07040 44.886 4.98e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00603 - - gmx:100793332 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00603 6 7248916 7251772 Vimu6g00603 6 7248916 7251772 ECH
Vimu6g00603 6 7248916 7251772 Vimu9g00213 9 2657976 2658542 PCT