Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00592 ATGGAAAGCAATGATCCGCCACCCCAAAACAACCCTTTTCTCTTCAACCCTTTGGAACCTCAAGAGCAAGGGCTATGCGACTTTGACTCATGGGGTAACCTTTTCTCTGCCCAGAACAGCTTGTTGTTGCTTAATGGTGATGGCAAGGAAACTATTCAACGTGCTTCTTCTTCCTCTTCATCTTTAATGGCTCAAAATAAGGTAGTTTGCGAGGAGGAAAAGGGTAACAAGGAGAAAAGGAATGGTGTGAGGGTGAAGAAAACAACACGAGTGCCGAGGTTTGCTTTTCAAACCAGAAGTGCAGATGATGTTTTGGATGATGGTTATCGCTGGAGGAAATATGGACAGAAAGCTGTGAAAAACAGCACATATCCCAGAAGTTACTACCGGTGCACGCACCACACATGCAATGTGAAGAAACAAGTGCAAAGGCTGTCGAAAGACACAAGCATTGTGGTCACAACGTACGAGGGAATTCACAACCATCCATGCGAGAAGCTGATGGAAACTCTAACCCCTCTGCTGAAGCAAATACAGTTTCTTACTAGCTTGTAA 555 0.4468 MESNDPPPQNNPFLFNPLEPQEQGLCDFDSWGNLFSAQNSLLLLNGDGKETIQRASSSSSSLMAQNKVVCEEEKGNKEKRNGVRVKKTTRVPRFAFQTRSADDVLDDGYRWRKYGQKAVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLTSL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00592 184 SUPERFAMILY WRKY DNA-binding domain 98 164 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00592 184 ProSiteProfiles WRKY domain profile. 100 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00592 184 FunFam WRKY transcription factor 57 91 165 - -
Vimu6g00592 184 Gene3D WRKY domain 89 164 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00592 184 SMART WRKY_cls 105 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00592 184 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 9 166 IPR044810 GO:0003700
Vimu6g00592 184 Pfam WRKY DNA -binding domain 106 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00592 Vimu-Chr6 7141618 7142655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00592 78 184 WRKY Transcription Factor Family AT5G41570 72.897 6.49e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g00592 WRKY 1.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00592 - - gmx:100127398 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00592 6 7141618 7142655 Vimu9g00218 9 2675753 2678836 PCT