Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00589 TTGCACCTTATCATTTCTCTCTCTGGTGAAAAGTCAGCGCCTTCTTTTGTCTTTTCTCTCTCTCAACAAAGGGCATACACTGCAGAGTCTGTCTCCATGGCCGAAGATTGGGATCTACATGCGGTGGTCAGAGGTTGCTCCACCGTCACATCATCCTCCGTGTCGTCTTCTTCTTCCTCTTCCTCTGGTTTTGCCTCTTGTTACTTCCACCCTGAAGGAGTTTCCTCCTCCTCTTCTTCTTCTGGCTTTTCCATCTTCAGAAGTGAACTAGGAAGCCAGGTTATGTCGCTTTCTGCGTACCCCTTTGAGGCAAGGAGCCCCATTGAGGAGCTGCATGAGCTTTGCAGGCCTTTCTTCTGCAAATCTCAGCCTCTCTCGTTGCAAGCCTCTTCCCCCTTGTCCTCACTCTCTTCCTATTCTTCTGCGCCTCCCAAAACGGTTTCATCTCAAGAGAAGCAACAACAACAGCGAAACAAGCAGCCACTCTCTGTCACCACCCCACGATCTAAAAGAAGGTACAAAAGTTCGTGCCTGCTTTGTTTTGATACCCCCAAAAGGGAAAAAAACGATCTTGGACTGTGCTGTGTTATAAGCGTGACTGATGAGACTGCAATTGTGTTTGCAGACAGTGTTTTGAAATCTTGGAAGAACCAACTTAAGAAAGTTTGTCAAGTGCCTTTTGAAAATCTCTCCTCGGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGATCTCCTTATCCAAGGGGGTACTACAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTAGAGAGGAACAGATCAGACCCAACCATGTTCATAGTGACTTACACTGCCGAGCACAACCATCCTGCTCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGCCAGAAGCCATTGGCCCCCCAAACTGCCACCACCGAACAAGACTCTGAGAAAAGCAAGAACCTCACAAAACCCTCTTCCCCTGCCACCTCAGGGGCAGAGGAAGAGGTTCCAGCACAAGTGGAAAAGTCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGATGAGGAAGAAGATGAATTTGTTTTGTCTGACATGGTGCTAACAGATGATTTCTTTGAGAGCTTGGATGAGCTGAGTCAACTCACTGCCCCTTCTGTTGTCACAGGAGACTGTTTCAGTGACCCCTTTTCAGCTATGGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCCGGTGGATGCATATGA 1263 0.4838 MHLIISLSGEKSAPSFVFSLSQQRAYTAESVSMAEDWDLHAVVRGCSTVTSSSVSSSSSSSSGFASCYFHPEGVSSSSSSSGFSIFRSELGSQVMSLSAYPFEARSPIEELHELCRPFFCKSQPLSLQASSPLSSLSSYSSAPPKTVSSQEKQQQQRNKQPLSVTTPRSKRRYKSSCLLCFDTPKREKNDLGLCCVISVTDETAIVFADSVLKSWKNQLKKVCQVPFENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQTATTEQDSEKSKNLTKPSSPATSGAEEEVPAQVEKSESREEKEDVMDDEEEDEFVLSDMVLTDDFFESLDELSQLTAPSVVTGDCFSDPFSAMAIPSWVASGAATAGGCI 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00589 420 FunFam WRKY transcription factor 22 215 285 - -
Vimu6g00589 420 Coils Coil 420 420 - -
Vimu6g00589 420 ProSiteProfiles WRKY domain profile. 226 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00589 420 MobiDBLite consensus disorder prediction 136 168 - -
Vimu6g00589 420 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 36 385 IPR044810 GO:0003700
Vimu6g00589 420 MobiDBLite consensus disorder prediction 289 332 - -
Vimu6g00589 420 SUPERFAMILY WRKY DNA-binding domain 229 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00589 420 SMART WRKY_cls 231 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00589 420 MobiDBLite consensus disorder prediction 286 362 - -
Vimu6g00589 420 Gene3D WRKY domain 215 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00589 420 Pfam WRKY DNA -binding domain 233 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00589 Vimu-Chr6 7112746 7114423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00589 33 420 WRKY Transcription Factor Family AT4G01250 42.278 1.97e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g00589 WRKY 4.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00589 K13425 - gmx:100798084 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00589 6 7112746 7114423 Vimu8g02244 8 29196482 29197057 ECH
Vimu6g00589 6 7112746 7114423 Vimu3g02990 3 43943056 43944804 ECH
Vimu6g00589 6 7112746 7114423 Vimu6g00589 6 7112746 7114423 ECH
Vimu9g00234 9 2836959 2837582 Vimu6g00589 6 7112746 7114423 ECH
Vimu7g02426 7 20778539 20779187 Vimu6g00589 6 7112746 7114423 ECH
Vimu11g02887 11 48736625 48741947 Vimu6g00589 6 7112746 7114423 ECH
Vimu6g00589 6 7112746 7114423 Vimu9g00234 9 2836959 2837582 PCT