Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00576 ATGTCAATCTTCGACGGAGCTTTCATGAACACGCAGCTTTCCAAGCACACTTCTATCTTCGGGCTCCGTCTCTGGGTCGTGATCGGAATCCTCATCGGCGTCTTCATCGTCTTCACTCTCTTCCTCCTCTCCCTCTGTCTAGTATCTCGTCGGAACCGCCGCCGTTCTGTCGCCGGCTATAAGGTCGCCGGATCCGCCCAAGCGGCCAAGGAAATTCATACGATAGTGCACCTTCCTGGATCCCACATGCCCCGGCCTCCGGCGAAGGCGCCGGAGATCCAGGTGGAGATGGGGAAGGCGGAACACCGGGTGGTTGTCCACTGCGATAGGGTTTCGAGTGAGGAGAGTAAGGGGACGATGGGGAGTGGTTGCGAAACGACGTCGTCTTTTGGAAGTGGGAGTGTTGGTGGGCTTGGGCTTGGGCCTGAGGTTTCTCATCTTGGGTGGGGGAGGTGGTACACTCTGAGGGAGCTTGAGGATGCCACTGGAGGGTTGTGTCCGGAAAACGTGGTTGGTGAAGGTGGTTATGGCATTGTCTATCATGGGGTGCTTAATGATGGTACCAAAATTGCTGTGAAGAACCTCTTGAATAACAAGGGCCAAGCTGAGAAAGAATTTAAAGTAGAAGTAGAAGCTATTGGTCGAGTGCGACACAAAAATCTTGTTCGGTTACTTGGATACTGTGTTGAGGGAGCCTACAGGATGCTTGTGTATGAATATGTAGACAATGGTAATCTAGAACAATGGTTGCATGGGGATGTCGGACCTGTAAGCCCTTTGACATGGAACATACGCATGAACATTATTTTGGGAACTGCAAGAGGATTGGCTTATCTTCATGAGGGTCTTGAGCCAAAAGTTGTTCACCGAGATGTGAAATCAAGCAACATACTCATTGATCGACAATGGAACTCCAAGGTTTCTGATTTTGGACTTGCCAAGCTTTTGTGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGGACATTTGGGTTATCAAAAGATAGTGACTCTCTTTTCTCTTTCGGTAGTTATGTTGCACCAGAATATGCCTGCACTGGAATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGAATCCTTATCATGGAGATAATAACTGGAAGAAGCCCAGTTGATTATGCTAGACCACAAGGAGAGGTTAATTTAATAGAATGGTTGAAGACTATGGTCGGGAATAGAAAATCTGAGGAAGTAGTTGATCCTAAGCTTCCTGAGATGCCATCTTCAAAGGCTCTTAAACGTGCTTTGTTGATTGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGACCAAAGATGGGACATGTGATCCACATGCTTGAGGCAGACGACATGTTATTCCACAATGAACACAAAACTGATGGAGATTCTTCTCGTTCCTATCAAAATGAACATAAGGACTCAAATTTAGACAAGAGAACAGATGGTGTCACTGATCAAAGTGAAGATGCTAGTAGTAGTAGAAATAATCATCAGACCACTACATGGAGATGA 1521 0.4655 MSIFDGAFMNTQLSKHTSIFGLRLWVVIGILIGVFIVFTLFLLSLCLVSRRNRRRSVAGYKVAGSAQAAKEIHTIVHLPGSHMPRPPAKAPEIQVEMGKAEHRVVVHCDRVSSEESKGTMGSGCETTSSFGSGSVGGLGLGPEVSHLGWGRWYTLRELEDATGGLCPENVVGEGGYGIVYHGVLNDGTKIAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWNIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGLSKDSDSLFSFGSYVAPEYACTGMLTEKSDIYSFGILIMEIITGRSPVDYARPQGEVNLIEWLKTMVGNRKSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDMLFHNEHKTDGDSSRSYQNEHKDSNLDKRTDGVTDQSEDASSSRNNHQTTTWR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00576 506 SMART serkin_6 165 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00576 506 CDD STKc_IRAK 171 450 - -
Vimu6g00576 506 MobiDBLite consensus disorder prediction 458 488 - -
Vimu6g00576 506 ProSiteProfiles Protein kinase domain profile. 165 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00576 506 PANTHER OS01G0323000 PROTEIN 7 476 - -
Vimu6g00576 506 FunFam Probable serine/threonine-protein kinase At1g01540 145 240 - -
Vimu6g00576 506 MobiDBLite consensus disorder prediction 458 506 - -
Vimu6g00576 506 SUPERFAMILY Protein kinase-like (PK-like) 144 450 IPR011009 -
Vimu6g00576 506 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Vimu6g00576 506 MobiDBLite consensus disorder prediction 489 506 - -
Vimu6g00576 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Vimu6g00576 506 Pfam Protein tyrosine and serine/threonine kinase 169 449 IPR001245 GO:0004672|GO:0006468
Vimu6g00576 506 Gene3D Phosphorylase Kinase; domain 1 149 240 - -
Vimu6g00576 506 FunFam Putative receptor-like serine/threonine-protein kinase 241 464 - -
Vimu6g00576 506 Gene3D Transferase(Phosphotransferase) domain 1 241 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00576 Vimu-Chr6 6951411 6954655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00576 104 477 Receptor kinase-like Gene Family AT4G02010 39.683 5.37e-89 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vimu6g00576 PK_Tyr_Ser-Thr 4.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00576 - - gmx:100800724 851.277