Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00571 ATGGCGGTGGGGAACGACTCCGACGAGTCGACTTGGGAGTATGACCCGGTGGAGGAGGTGCAGCGAGTCATCGAATCGGTCGTTCAGTTCGGGGACTACCGGAGGACGCAGCGGAGGGAGTGCCACAACCTCGTGCGCCGTTTCAAGCTCATGTTACCGATCTTGGAAGAGCTTCGCGACATCTCACAACCCTTTACGGAAAACGGCGTCGCTTGGTTAGTCCAATTCAAGGAGGCGCTATTGTTCGCCAAGGATTTGTTGAAACTGTGCAACCAAGGAAGCAAGATTTACCTCTCTTTGGAGACAGAGACGATAATGGCCACGTTTCAGAAAGTGTATGAAAAATTAAGCCAAGCGTTTGGTGGCGTGCCTTGTGAGGAATTGGGCATCTCGGATGAAGTCAAAGAGCAGCTTGAGCTAATGCACGTGCAACTGAAGCGAGCGAGGAGAAGAACTGATACACAGGACATAGAACTTGCGATGGATATGATGGTAGTGTTCTCTGATGAGGATGATAGAAATTCCGACAGTGCTATAATCGAGAGACTGGCAAAAAAGTTGGAGCTTCATAGCGTTGAGGAACTTAACATAGAAACAATGGCCATCAGGCAACTTGCAGAAGAAAGAAAAGGGCAACAGATTGAAAGTACTATGCGAATCATCAAACTTCTCAACAAATTCAAACGCGTTGCAGGCATGCCAGAAACCAGTGTCCTTGATGATCCTGTCGCACCCAAGATGCTAGAGAGGTGCACCTCTTTGGTCATCCCACACGAGTTTCTCTGCCCAATAACACTAGAAATCATGACAGATCCTGTTATCATAGCAAGTGGACAGACATTTGAAAGGGAAAGCATAGAGAAGTGGTTCGAAGCCAACCACAACACATGCCCAAAGACAAGGCAACCTTTGCAGCACATGTCATTGGCACCAAACTGCGCATTGAGAAGTTTGATTGAAGAATGGTGTGTGAACAACAAATTCAAGCTTCCCAAAAAGTACGATTCAGCTAAAGAAAGTTGTCCAGGCAAAGAGGAAATTCCTTGTTTGGTTGAGAGCTTAGGATCCATTCATTTAGAAGAGCAAAGAAAAGCAGTGGAGAAGATACGTATGGTGTCAAAGGAGAATGCTGAGAACAGGGTGTTGGTAGCTGAATGTGGAGGAATACCACCACTAGTGCAACTACTGTCGTATCCAGATTCAAAAATACAAGAGCATGCTGTGACAGCACTTTTAAACCTATCAATTGATGAGGGTAACAAGAGACTTATATCATCAGAAGGTGCGATTCCAGCTATCATAGAAGTTTTGGAGAATGGAAGTTGTGTGGCTAAGGAAAACTCAGCAGCAACTTTATTTAGCTTGTCAATGATTGATGAGATTAAAGAGATTGTTGGTCAATCAAATGGGTTGCCACCTTTGGTGAATTTGTTGAAGAATGGAACAGTTAGAGGGAAGAAAGATGCTATAACAGCTCTTTTCAACTTATCTTTGAACCAAGCAAACAAAGGTAGGGCCATTAGGGCTGGCATTGTAGCACCCTTGGTTCAGTTGCTGAAGGACGTAAACTTAGGGTTGATCGATGAAGCTCTCTCCATTCTGTTACTCCTTGTTTCAAATTCAGAAGGAAGACAAGAGATTGGACAACTTAGTTTCATTGAAACTCTTGTTGAGTTCATGCGAGATGGGAGTCCGAAGAACAAGGAATGTGCAGCCTCAGTTCTTCTTGAGTTGTGCTTCAATAACTCATCCTTCATATTGGCAGCACTTCAGTTTGGAGTGTATGAACATTTGATAGAAATCAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAATGGCAATCTTAGAGCTCATAACCAAAAGCGAGCAGATTTAA 1881 0.4413 MAVGNDSDESTWEYDPVEEVQRVIESVVQFGDYRRTQRRECHNLVRRFKLMLPILEELRDISQPFTENGVAWLVQFKEALLFAKDLLKLCNQGSKIYLSLETETIMATFQKVYEKLSQAFGGVPCEELGISDEVKEQLELMHVQLKRARRRTDTQDIELAMDMMVVFSDEDDRNSDSAIIERLAKKLELHSVEELNIETMAIRQLAEERKGQQIESTMRIIKLLNKFKRVAGMPETSVLDDPVAPKMLERCTSLVIPHEFLCPITLEIMTDPVIIASGQTFERESIEKWFEANHNTCPKTRQPLQHMSLAPNCALRSLIEEWCVNNKFKLPKKYDSAKESCPGKEEIPCLVESLGSIHLEEQRKAVEKIRMVSKENAENRVLVAECGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKRLISSEGAIPAIIEVLENGSCVAKENSAATLFSLSMIDEIKEIVGQSNGLPPLVNLLKNGTVRGKKDAITALFNLSLNQANKGRAIRAGIVAPLVQLLKDVNLGLIDEALSILLLLVSNSEGRQEIGQLSFIETLVEFMRDGSPKNKECAASVLLELCFNNSSFILAALQFGVYEHLIEIKQNGTNRAQRKAMAILELITKSEQI 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00571 626 SUPERFAMILY RING/U-box 255 332 - -
Vimu6g00571 626 SUPERFAMILY ARM repeat 336 621 IPR016024 -
Vimu6g00571 626 Gene3D - 13 124 IPR036537 GO:0007166
Vimu6g00571 626 FunFam RING-type E3 ubiquitin transferase 256 327 - -
Vimu6g00571 626 FunFam RING-type E3 ubiquitin transferase 331 626 - -
Vimu6g00571 626 Gene3D - 333 626 IPR011989 -
Vimu6g00571 626 CDD RING-Ubox_PUB 257 309 IPR045210 -
Vimu6g00571 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 330 IPR013083 -
Vimu6g00571 626 FunFam RING-type E3 ubiquitin transferase 13 126 - -
Vimu6g00571 626 Coils Coil 131 151 - -
Vimu6g00571 626 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842|GO:0016567
Vimu6g00571 626 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Vimu6g00571 626 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Vimu6g00571 626 SMART Ubox_2 259 322 IPR003613 GO:0004842|GO:0016567
Vimu6g00571 626 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515
Vimu6g00571 626 SMART arm_5 458 498 IPR000225 GO:0005515
Vimu6g00571 626 SMART arm_5 417 457 IPR000225 GO:0005515
Vimu6g00571 626 SMART arm_5 540 580 IPR000225 GO:0005515
Vimu6g00571 626 SMART arm_5 376 416 IPR000225 GO:0005515
Vimu6g00571 626 SMART arm_5 499 539 IPR000225 GO:0005515
Vimu6g00571 626 PANTHER U BOX DOMAIN-CONTAINING 38 620 - -
Vimu6g00571 626 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515
Vimu6g00571 626 Pfam Armadillo/beta-catenin-like repeat 460 497 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00571 Vimu-Chr6 6911080 6913793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00571 17 626 U-box Gene Family AT5G42340 61.967 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00571 - - gmx:100777362 1018.07