Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00565 ATGGGATTTCCGGTAGGGTATCCGGAAGTGCTGGTCCCCAAGCTCTTCCTCCACGCGCTCTCGCTCCTTGCGTGGCTCCGCTCGCTCGTCGCCGCGCTCTTCCACCTCCTCCGCCTCTCCGACCTCCTCGACACCGACGCTACCGCAATCGCTTGGCCGCCGGAGTCCCCGCCGCCGCGCTCTCCGACTCTCTCCGCGCTCCTCATCCGCGAGTTTCTCCCCGTGGCGGCGTTCCGTGACCTGGACGGCATCGGCGAGTCCCCTCCGTCCCCGACGGGGTGCGCGGTGTGCCTGAGCGAGTTCTGCGCGGAGGAGGAGATCAGATGCATGGCGAACTGCAAACACATGTTCCACCGCGCGTGCGTGGACCGTTGGATCGATCACGATCAGAAGACGTGTCCTCTGTGTAGGACACCATTCGTGCCGGAGCACAAGGTGGAGGAGTATAACCAGCGGCTATGGGCCGCTTCTGGTGTTTCCCAGTTTTACCAAGATGATTACACTCCTTCTCTCTGA 516 0.6318 MGFPVGYPEVLVPKLFLHALSLLAWLRSLVAALFHLLRLSDLLDTDATAIAWPPESPPPRSPTLSALLIREFLPVAAFRDLDGIGESPPSPTGCAVCLSEFCAEEEIRCMANCKHMFHRACVDRWIDHDQKTCPLCRTPFVPEHKVEEYNQRLWAASGVSQFYQDDYTPSL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00565 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 157 - -
Vimu6g00565 171 SUPERFAMILY RING/U-box 87 146 - -
Vimu6g00565 171 SMART ring_2 94 136 IPR001841 -
Vimu6g00565 171 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Vimu6g00565 171 Pfam Ring finger domain 94 137 IPR001841 -
Vimu6g00565 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 146 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00565 Vimu-Chr6 6848852 6849367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00565 1 158 C3H Transcription Factor Family AT1G63840 44.654 3.28e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00565 K16281 - gmx:100813224 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00565 6 6848852 6849367 Vimu6g00565 6 6848852 6849367 ECH
Vimu6g00565 6 6848852 6849367 Vimu9g00270 9 3252055 3252564 PCT