Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g00560 | ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTAATCTGCAAGGGGCACCGTGCCCGCCGACTTTTGAAGAGCATGAGTCTTTAACTTCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGTTTGAACCTGGAAGCATCCGTGCCTGATACATTCCAGCCCCCTCCCGTGCCTCTTCCTTATGACACGGTTTTGGGAGGTTCTGCATCAACAACATATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAGCTTTAATTACTCGTGAAGATGTTGAAGAGTCAAATTGTAAAGATCAAACCAACTCCAGTCCTACATCTCCAAGGAAGCAAGAACTATCAAAACTGAATGAAAGTAAAATATTATTGATGGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGAGATTTGACCAAATGTGAACACCATTTTCACCTATCCTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGTATGGCTTTTGCATTAG | 549 | 0.4171 | MGGCCCSARKPNLQGAPCPPTFEEHESLTSNDGTNASLNAGFLVGLNLEASVPDTFQPPPVPLPYDTVLGGSASTTYSESGRETVSSFEALITREDVEESNCKDQTNSSPTSPRKQELSKLNESKILLMEEEDVCPICLEEYDVENPRDLTKCEHHFHLSCILEWMERSDSCPICDQVWLLH | 182 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g00560 | 182 | SUPERFAMILY | RING/U-box | 128 | 180 | - | - | |
Vimu6g00560 | 182 | MobiDBLite | consensus disorder prediction | 96 | 119 | - | - | |
Vimu6g00560 | 182 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 32 | 179 | - | - | |
Vimu6g00560 | 182 | MobiDBLite | consensus disorder prediction | 103 | 117 | - | - | |
Vimu6g00560 | 182 | Pfam | Ring finger domain | 134 | 175 | IPR001841 | - | |
Vimu6g00560 | 182 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 179 | IPR013083 | - | |
Vimu6g00560 | 182 | SMART | ring_2 | 135 | 175 | IPR001841 | - | |
Vimu6g00560 | 182 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 176 | IPR001841 | - | |
Vimu6g00560 | 182 | FunFam | Putative E3 ubiquitin-protein ligase RHB1A | 111 | 180 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g00560 | Vimu-Chr6 | 6798345 | 6800158 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g00560 | 1 | 177 | C3H Transcription Factor Family | AT4G00335 | 54.396 | 1.01e-59 | 182 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g00560 | - | - | gmx:100803758 | 311.997 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu6g00560 | 6 | 6798345 | 6800158 | Vimu6g00560 | 6 | 6798345 | 6800158 | ECH |