Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00560 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTAATCTGCAAGGGGCACCGTGCCCGCCGACTTTTGAAGAGCATGAGTCTTTAACTTCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGTTTGAACCTGGAAGCATCCGTGCCTGATACATTCCAGCCCCCTCCCGTGCCTCTTCCTTATGACACGGTTTTGGGAGGTTCTGCATCAACAACATATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAGCTTTAATTACTCGTGAAGATGTTGAAGAGTCAAATTGTAAAGATCAAACCAACTCCAGTCCTACATCTCCAAGGAAGCAAGAACTATCAAAACTGAATGAAAGTAAAATATTATTGATGGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGAGATTTGACCAAATGTGAACACCATTTTCACCTATCCTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGTATGGCTTTTGCATTAG 549 0.4171 MGGCCCSARKPNLQGAPCPPTFEEHESLTSNDGTNASLNAGFLVGLNLEASVPDTFQPPPVPLPYDTVLGGSASTTYSESGRETVSSFEALITREDVEESNCKDQTNSSPTSPRKQELSKLNESKILLMEEEDVCPICLEEYDVENPRDLTKCEHHFHLSCILEWMERSDSCPICDQVWLLH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00560 182 SUPERFAMILY RING/U-box 128 180 - -
Vimu6g00560 182 MobiDBLite consensus disorder prediction 96 119 - -
Vimu6g00560 182 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 32 179 - -
Vimu6g00560 182 MobiDBLite consensus disorder prediction 103 117 - -
Vimu6g00560 182 Pfam Ring finger domain 134 175 IPR001841 -
Vimu6g00560 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 179 IPR013083 -
Vimu6g00560 182 SMART ring_2 135 175 IPR001841 -
Vimu6g00560 182 ProSiteProfiles Zinc finger RING-type profile. 135 176 IPR001841 -
Vimu6g00560 182 FunFam Putative E3 ubiquitin-protein ligase RHB1A 111 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00560 Vimu-Chr6 6798345 6800158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00560 1 177 C3H Transcription Factor Family AT4G00335 54.396 1.01e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00560 - - gmx:100803758 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00560 6 6798345 6800158 Vimu6g00560 6 6798345 6800158 ECH