Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00557 ATGATGGGTAACGGGGAGCCTTTGGATTTGTATAAACTTTTCATGGTGGTGAAGAAGAAAGGTGGTTATGATGCTGTTTGTAAGAATAGGCTGTGGGATTTGGTGGGGGAGGAATATGGATTGGGTGTGAAGGTTGGTTCCGATGTGGAACATGTTTACAGCAAACACTTAAGTGCTCTAGAGACATGTTTGAAGAATGTTGCTGGTGGCAAGTTTGCTGAATATGGTTTAGAGGGTGATAGAGTTAAGTTTCAGAAACATTTGATGGAGGCACACACTGAATCCATGTTGGACGATTCTGGTGAGGAGGAGGTAGGAGATGAACATGAGAGGAGGGAGTGTGGCTGTCCGGATGGTAGGAAGCTCAGTGGTAGTAATAGAGTCAAGTGTGTGAAACCAGAGTCCAATGGGGCTGAACAGGAGAGTGCTTATAAGTATATAGATAGGAGTAAGTCATGTGGTAGTAATAGTGTGAAAGACAAGAATACAAATTCTAATGGGAATGAATATGATAATGTATGTGACTATCTAGAGGGGAGGAAGTTGTGTGGTACTAATAGGGTGAACAGGGTGAATCCAGATTTCAATGAGGCCAAGAAAGTTAGAAGGCCGGAACTTGTTGATTTGGACATGCTGGAGGACCACGACAAGGGTGAGCCTATTGTAGTAAAATTTTGCGGATTTAATACTGAAGTGGATACACCAGAAGAGTTTGATGAGAGCAAATTATTAACTGTGGATGCATCCGATGCAGAAAGTGACATGCTTAGATTGTCAGATGGAAGCAAGAGCAACAATAAAGATGATGATGACGACGATAGTGAAGTCTTGATATTGGATCCATCTAGTGTTGATAAAAAGAAATTTGGTCACAAGAGGAAGAGAGAGTCTGTGTCAGAAATGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCAGTTGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTCTTGCAGTAGTCAAGAGATCTGGAAGCAGGTTTTGTTGTTTCGAGAAGCAGTCTTTCTAAAGAAAGATTTTGAGACAGCCAGTGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTCCATGTACGATGATCGCGTTGAGGCATTGTACAATTTTAGAAAGAGGTTGAAGTGTGAAGAGAAGTCTTTATTGGGAACATCTACATCTGATGGAGTCTCCTCGACTTCATCGAAAACAAAAGGTCGTGGAAATTTGGAGAGAACCTCAAGTTCTCGATCTGAAAATGTTGTCGATAAGAAGTTACTTGACTCCTGTAGTCTTGATAAATATGCGCGGGTGCACATCCCTGTGGGGCCAAATCATCAAGCTGAAGTGCCAGAATGGACTGGCATAAATTGTGAGAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTCCAAAATTTGTAAATTCAAAATCGTGTCTTATTGAAAGGGACCCAATTGGAAAAGGAAGACAAGATTCATGTGGCTGCCCAGTACAAGGTTCTGTTGAGTGTGTCCGGTTTCATGTTGGTGAGAAAAGGTCTAAAGTTAAGATGGAGCTGGGGGAGGCTTTTTTCCAATGGAGATTAGATATGGTAGGTGAAGAAGTTAGTAGTTCTTGGACAGATGAGGATGAGAAGAAGTTCAGAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTCTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCTGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAACAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAGTTCACACCATTGAGGAAAGTGTTTGGACATCAAACACCAAAATCACGCAACCTCACCTTGTTATCACCCAAAAAATCTACTGGCAAAAGGTCAAATAGCAAGTGA 1950 0.4128 MMGNGEPLDLYKLFMVVKKKGGYDAVCKNRLWDLVGEEYGLGVKVGSDVEHVYSKHLSALETCLKNVAGGKFAEYGLEGDRVKFQKHLMEAHTESMLDDSGEEEVGDEHERRECGCPDGRKLSGSNRVKCVKPESNGAEQESAYKYIDRSKSCGSNSVKDKNTNSNGNEYDNVCDYLEGRKLCGTNRVNRVNPDFNEAKKVRRPELVDLDMLEDHDKGEPIVVKFCGFNTEVDTPEEFDESKLLTVDASDAESDMLRLSDGSKSNNKDDDDDDSEVLILDPSSVDKKKFGHKRKRESVSEMLIWINSIAKNPCDPAVGSIPEKSKWKSCSSQEIWKQVLLFREAVFLKKDFETASEQLSWQSQKMHPSMYDDRVEALYNFRKRLKCEEKSLLGTSTSDGVSSTSSKTKGRGNLERTSSSRSENVVDKKLLDSCSLDKYARVHIPVGPNHQAEVPEWTGINCESDSKWLGTQIWPPKFVNSKSCLIERDPIGKGRQDSCGCPVQGSVECVRFHVGEKRSKVKMELGEAFFQWRLDMVGEEVSSSWTDEDEKKFRDVVKSNPASLDKCFWDHLFKTFPKKSREDLVCYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKSRNLTLLSPKKSTGKRSNSK 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00557 649 MobiDBLite consensus disorder prediction 602 649 - -
Vimu6g00557 649 MobiDBLite consensus disorder prediction 393 423 - -
Vimu6g00557 649 SMART bright_3 2 66 IPR001606 GO:0003677
Vimu6g00557 649 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Vimu6g00557 649 CDD ARID 4 61 - -
Vimu6g00557 649 MobiDBLite consensus disorder prediction 603 619 - -
Vimu6g00557 649 MobiDBLite consensus disorder prediction 255 270 - -
Vimu6g00557 649 Pfam ARID/BRIGHT DNA binding domain 4 61 IPR001606 GO:0003677
Vimu6g00557 649 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 642 - -
Vimu6g00557 649 MobiDBLite consensus disorder prediction 393 419 - -
Vimu6g00557 649 SUPERFAMILY ARID-like 4 72 IPR036431 GO:0003677
Vimu6g00557 649 Gene3D - 1 70 IPR036431 GO:0003677
Vimu6g00557 649 ProSiteProfiles ELM2 domain profile. 441 565 IPR000949 -
Vimu6g00557 649 MobiDBLite consensus disorder prediction 627 649 - -
Vimu6g00557 649 MobiDBLite consensus disorder prediction 255 276 - -
Vimu6g00557 649 SMART ELM2_2 443 495 IPR000949 -
Vimu6g00557 649 MobiDBLite consensus disorder prediction 94 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00557 Vimu-Chr6 6744997 6748450 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vimu6g00557 ARID 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00557 - - vun:114182925 1160.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00557 6 6744997 6748450 Vimu6g00557 6 6744997 6748450 ECH
Vimu6g00557 6 6744997 6748450 Vimu9g00283 9 3432856 3436316 PCT