Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00552 ATGTATTCTACTGGTCTTTCTGAAGAAGAAGTCAGAGCCGCAGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCCCCTAAGGACAGTTCCTCTGTCAACAAGTATTACAGTCTTGCTCATGCAGTGAGTGAGAAGGTTGTACGTCAACCATCAATGTTGCGGGCTGGAACACTTAGAGACTATCAGCTGGTCGGTTTGCAATGGATGCTTTCCTTGTATAACAACAAATTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGAAAAACTGTGCAGGTTATGGCATTAATTGCCTATTTGATGGAGTTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTGTATACTTGGTTACCATCTGTGTCATGCATTTTTTATGCTGGAGGGAAGGATTACCGGTCAAAGCTATATTCACAGGAGATTATGGCTATGAAATTTAATGTCCTGGTGACTACTTATGAGTTCATCATGTATGATCGGTCAAGGCTTTCAAAAATTGACTGGAAGTATATAATAATTGATGAAGCACAGAGAATGAAGGATAGGGAATCAGTTCTAGCTCGTGATCTTGATAGATATCGTTGTCAAAGACGCCTGCTTCTGACAGGAACACCTTTACAGAATGATTTGAAAGAACTGTGGTCGCTTTTGAATTTACTTCTTCCAGAGGTTTTTGACAACAAGAAAGCCTTTAATGATTGGTTCTCAAAGCCATTTCAAAAGGAAGGTTCCACTCAAAATACAGAAGATGATTGGCTTGAGACTGAAAAAAAAGTTATCATTATCCATCGACTTCACCAAATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTCGAAGAAGTTGAGGGTTCACTACCAGCAAAGGTATCTATAGTTTTACGATGTAAGATGTCAGCTTTGCAGAGTGCCATTTATGACTGGGTTAAATCAACGGGTACCCTTCGACTTGATCCCGAGGGTGAGGAATCTAAGATTGAAAAGAATCCACTCTACCAGGCAAAAGAGTACAAGACTTTAAATAACAGATGCATGGAGTTGCGGAAAACTTGTAATCATCCATGTCTTAATTACCCATTATTTAATGAATTATCTACAAATTTAATTGTAAAATCTTGTGGGAAATTGTGGATCCTGGATAGGATCCTTATAAAGCTTCAAAGAACTGGTCATCGAGTTTTGCTGTTCAGTACCATGACAAAACTTCTAGACATATTGGAAGATTACTTGAATCTGCGAAGGTTTGTGTACAGAAGAATTGATGGGACTACTAATTTGGATGACCGTGAATCAGCTATAATGGATTTTAATAGCCCTGATTCAGACTGTTTCATCTTCTTGCTTAGCATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTTATTTATGATCCTGATCCTAACCCGAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGTATTGGACAGAAAAGAGAAGTCAGAGTTATCTACATGGAGGCTGTTGTTGACAAAATTTCTAGCCATCAGAAGGAGGATGAACTGAGAAGTGGAGGCACTGTCGATATGGAGGATGAGTTTGTGGGTAAGGACCGCTATATAGGATCAGTTGAGAGCCTCATAAGGAACAATATTCAACAATACAAGATAGATATGGCTGATGAGGTTATCAATGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGGCGTTTGACTTTAGAAACATTGTTACATGATGAAGAAAGGTATCAAGAAAATGTCCACAATGTTCCTTCTCTTCAGGAGGTAAACCGCATGATTGCCAGGAGTGATGAGGAAGTGTTGTTGTTTGATCAAATGGATGAAGAACTGGATTGGCCTGAGGAGATGATGCAACATGATGAGGTGCCTCAGTGGCTTCGAGCCAATACAAGAGAAGTGAATGCTGCTATTGCTTCTTTGTCTAAAAGACCATCAAAGAACATTTTATTGGGTGGTAGTGTTGGCATGGACAGTGAGGTGGGTTCTGAAAGGAGAAGGGGACGGCCCAAGGGAAAAAAACATCCTAATTATAAAGAGTTGGAAGATGAAAATGGAGAATATTCTGAAGCAAGCTCTGAAGACAGAAATGAGTATTCTGCACAAGAAGAAGGGGAAATTGGAGAGTTTGAAGATGATGTTTATAGTGGCGCTGATGGACATCAATTGGAAGAGGATGGTTTAACTTCTGATGCTGGATATGAAATTGCTCGTTCTTCAGAAAATGCTAGACATAATCATGTGGCTGAAGAGGCTGGTTCCTCAGGATCATCCTCTGACAATCAAAGATTGGTGCAAACAGTTTCACCTTCAGTTTCTGCTCAGAAATTTGGTTCTCTCTCCGCATTGGATGCCAGGCCAAGCTCCATTTCAAAAATTATGGGAGACGACTTGGAAGAAGGAGAAATTGCAGTATCAGGTGATTCTCACATGGATCATCAACAATCAGGAAGTTGGCTTCATGATCGAGATGAGGGGGAAGATGAACAAGTTTTGCAGAAGCCCAAGATTAAGCGCAAGCGTAGTCTTCGTGTTCGTCCCCGCCAAGCTGTGGAAAGGCTTGAGGACAAGTCTGGTAGTGAGATGAAATCTCTTCAACGGGGAGAACCATCTCTTTTGGCAGACTATAAATATAAAATGCAAACAAGGATTGATACGGAATCAAAATCATTTGTAGACAACAATGCCGGCAAGCATGATAAGAATGCAACATCATTTAAAAACAAGCAAAAGTTACCTTCAAGGAAAGTAGCTAATAATTCCAAATTACATGGGTCACCTCAGTCTAATCGTTTGAATTGCTCATCTGGTCCTTCTGATGATGGTGGTGAACACCCTAGAGAAAGTTGGGAGGGGAAGCCTCTAAATTCAAATGGATCTTCAGTTCATGGCACTAAGACGACTGAGATAATCCAAAGAGGATGCAAGAATGTAATTAGCAAGCTCCAAAGGAAAATAGACAAGGAAGGCCATCAGATTGTACCTTTGCTAACAGATTTATGGAAGAGGATTGAGAATTCTGGGTATGCGGGTGGATCTGGGAGTAGTCTGTTGGATTTACGGAAGATTGACCAGCGGATTGATAGAATGGATTATACCGGAGTAATGGAGCTCGTGTTTGATGTACAGTTCATGTTGAGGGGTTCAATGCATTTCTACGGATATTCATATGAGGTGAGATCTGAAGCAAGGAAGGTTCATGATCTATTCTTTGATATCCTGAAAATTGCGTTCCCAGATACAGATTTTGGAGAAGCAAGATGTGCAATTTCTTTCTCCAGCCAAATTCCTGCCGGTACCACCACATCTCCAAGGCAAGTGACAGTTGGCCCCAGCAAAAGGCACAGAGCGACCAATGATGTGGAAACCAATCCAATCCCTCCACAGAAGCTGGCACAAAGCGGAGGTGCTTCTAATGGGGAAAGCAGCAGGTTCAAAGGTTCAAAAACTGGAAGTGGCAGCAGCAGTGCACGTGAGCAACCTCAGCAGGATAATCCTACAATGCTCACTCATCCAGGTCAGTTGGTTGTGTGCAAGAAGAAAAGAAATGACAGAGAAAAGACATTGGGGAAGGGAAGGAGTGGATCAGCATGTCCTGTTTCTCCACCTTGTGCTATAAGAAGTCCAGGGTCAGGTTCAAACCCAAAGGATGGTAGATGGGGTAGTCAACCATCTCAACACTCAAATGGGTCAGTTGGTTGGGCAAACCCTGTAAAGCGTTTGAGAACAGATTCTGGGAAGAGGAGACCAAGCCATATGTAG 3840 0.4188 MYSTGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDSSSVNKYYSLAHAVSEKVVRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYTWLPSVSCIFYAGGKDYRSKLYSQEIMAMKFNVLVTTYEFIMYDRSRLSKIDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGSTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEEVEGSLPAKVSIVLRCKMSALQSAIYDWVKSTGTLRLDPEGEESKIEKNPLYQAKEYKTLNNRCMELRKTCNHPCLNYPLFNELSTNLIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEDYLNLRRFVYRRIDGTTNLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDELRSGGTVDMEDEFVGKDRYIGSVESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQENVHNVPSLQEVNRMIARSDEEVLLFDQMDEELDWPEEMMQHDEVPQWLRANTREVNAAIASLSKRPSKNILLGGSVGMDSEVGSERRRGRPKGKKHPNYKELEDENGEYSEASSEDRNEYSAQEEGEIGEFEDDVYSGADGHQLEEDGLTSDAGYEIARSSENARHNHVAEEAGSSGSSSDNQRLVQTVSPSVSAQKFGSLSALDARPSSISKIMGDDLEEGEIAVSGDSHMDHQQSGSWLHDRDEGEDEQVLQKPKIKRKRSLRVRPRQAVERLEDKSGSEMKSLQRGEPSLLADYKYKMQTRIDTESKSFVDNNAGKHDKNATSFKNKQKLPSRKVANNSKLHGSPQSNRLNCSSGPSDDGGEHPRESWEGKPLNSNGSSVHGTKTTEIIQRGCKNVISKLQRKIDKEGHQIVPLLTDLWKRIENSGYAGGSGSSLLDLRKIDQRIDRMDYTGVMELVFDVQFMLRGSMHFYGYSYEVRSEARKVHDLFFDILKIAFPDTDFGEARCAISFSSQIPAGTTTSPRQVTVGPSKRHRATNDVETNPIPPQKLAQSGGASNGESSRFKGSKTGSGSSSAREQPQQDNPTMLTHPGQLVVCKKKRNDREKTLGKGRSGSACPVSPPCAIRSPGSGSNPKDGRWGSQPSQHSNGSVGWANPVKRLRTDSGKRRPSHM 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 915 932 - -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 841 862 - -
Vimu6g00552 1279 SUPERFAMILY Bromodomain 1044 1103 IPR036427 GO:0005515
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 1123 1139 - -
Vimu6g00552 1279 Pfam SNF2-related domain 69 373 IPR000330 GO:0005524|GO:0140658
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 1148 1196 - -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 701 729 - -
Vimu6g00552 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 635 IPR027417 -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 873 889 - -
Vimu6g00552 1279 PANTHER SNF2/RAD54 HELICASE FAMILY 39 817 - -
Vimu6g00552 1279 SMART bromo_6 990 1105 IPR001487 GO:0005515
Vimu6g00552 1279 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 78 243 IPR014001 -
Vimu6g00552 1279 CDD SF2_C_SNF 392 517 - -
Vimu6g00552 1279 SMART ultradead3 62 251 IPR014001 -
Vimu6g00552 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 296 IPR027417 -
Vimu6g00552 1279 Gene3D - 306 516 IPR027417 -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 674 731 - -
Vimu6g00552 1279 FunFam Brahma1 992 1115 - -
Vimu6g00552 1279 SMART helicmild6 423 507 IPR001650 -
Vimu6g00552 1279 Coils Coil 704 724 - -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 767 799 - -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 1203 1217 - -
Vimu6g00552 1279 Gene3D - 57 305 IPR038718 -
Vimu6g00552 1279 Pfam Helicase conserved C-terminal domain 396 507 IPR001650 -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 1123 1279 - -
Vimu6g00552 1279 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 574 IPR001650 -
Vimu6g00552 1279 FunFam ATP-dependent helicase BRM 306 516 - -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 834 894 - -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 1241 1259 - -
Vimu6g00552 1279 FunFam ATP-dependent helicase BRM 57 305 - -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 915 993 - -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 933 963 - -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 979 993 - -
Vimu6g00552 1279 MobiDBLite consensus disorder prediction 777 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00552 Vimu-Chr6 6697934 6704232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00552 48 532 RAD5 or RAD16-like Gene Family AT1G02670 25.853 8.18e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu6g00552 SNF2_N 3.5e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00552 K11647 - gmx:100811608 2246.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00552 6 6697934 6704232 Vimu6g00552 6 6697934 6704232 ECH
Vimu6g00552 6 6697934 6704232 Vimu9g00285 9 3453409 3465664 PCT