Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00547 ATGGGATATCTGAGCAAAGCTTCCAAAACCCTAAGGCAATCGAATTACTTAGCGTTGTTATGCAATTTCAATTTCTATTTCAACCCATTAACCAGCAGAATAACCAATGAACGCTTTCCTGTGAGGCGTGAACTGTTCTGTTCACAGTCACGCCAATACAGCACCACCACGAGAGAGAAAAGCACCATAGATTTGAGACAATACCCTCCAGAGCTCGTTAGAAACTTCTCAATCATTGCGCATGTGGATCATGGCAAGTCCACCCTCGCTGATCGACTTCTAGAACTCACTGGAACAATTAAGAAAGGCCATGGCCAGCCTCAGTATCTTGATAAATTGCAGGTGGAGAGAGAAAGAGGAATCACGGTTAAAGCCCAGACAGCAACAATGTTCTATAAGCACAGTGTAAATGGTGATGATTTCAGTGATGGAAAGGAGTCACCTAGTTTTTTGCTGAATCTTATTGATACTCCTGGACATGTTGATTTTAGTTATGAAGTTTCAAGATCATTGGCAGCTTGTCAAGGTGTGCTTTTGGTTGTTGATGCTGCTCAGGGAGTCCAAGCTCAAACTGTTGCTAACTTTTACCTTGCCTTTGAGTCTAACCTAACAATTGTGCCGGTTATAAACAAGATTGATCAGCCAACTGCTGATCCTGATCGTGTTAAAGCCCAATTAAAATCAATGTTTGATCTTGATCCGAATGATGCACTGCTAACATCTGCTAAAACTGGAGAGGGTCTTGAGCAAATCCTTCCGGCTGTCATAGAGCGTATACCTGCCCCTCCTGGTAGGAGGGAATCTTCTCTTCGCATGCTTTTACTTGATTCATATTATGACGAATACAAAGGGGTAATATGTCATGTTGCTGTTGTTGATGGTGTCCTGAGCAAGGGGGATAAGATTTCATCTGCAGCTACTGGTCAGTCTTATGAAGCTTTAGATGTTGGCATCATGCATCCTGAACTTACACCTACCGGTATCTTACTTACTGGACAAGTTGGTTATGTTGTAAGTGGCATGCGAACAACCAAAGAGGCCCGTGTTGGTGATACAATTTACCATACTCGGACTTCTGTAGAGACTCTTCCAGGGTTCAAGCCAGCGAAACATATGGTGTTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCTCTAAATCACGCAATAGAGAGGTTGACATGCAATGATGCTAGTGTCTCTATTACTAAAGAAACTAGCACTGCTCTAGGTCTCGGGTTCAGGTGTGGGTTTTTAGGCCTTCTGCACATGGATGTTTTTCATCAAAGACTTGAACAGGAATACGGAGCTAATGTTATCTCAACTGTTCCTACCGTGCCTTACACATTTGAGTTTTCTGATGGAAGCAAGGTAGAAGTTCAGAATCCTGCTTCGTTACCCTCTAATCCCAAGCAAAAAGTGACAGCCTGTTGGGAACCTACAGTAATAGCTACTATAATCATTCCTAGTGAGTATGTGGGACCTGTTATTACCCTTGTCTCTGAGCGTAGGGGTCAGCAGTTGGAGTATTCATTCATTGACAGTCAACGGGTATTCATGAAGTACCGCCTGCCTTTGAGAGAAATTGTTGTTGACTTTTATAATGAATTGAAGAGTATAACATCAGGCTATGCTTCATTTGATTACGAGGACTCTGATTATCAACAAGCTGATCTGGTAAAACTTGATATTCTCTTGAATGGACAACCAGTTGATGCAATGGCAACCATAGTGCATAACACAAAAGCATACCGCGTTGGGCGTGAACTGACAGAGAAATTGAAAACTGTCATTGACAGGCAAATGTTCGAGATAATCATACAAGCTGCCATTGGGTCAAAAATCATAGCAAGGGAGACGATTTCTGCAATGAGGAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATGTTACTCGAAAAAGGAAGCTATTGGAGAAGCAAAAAGAAGGAAAGAAGAGAATGAAGCGAGTTGGTTCTGTTGATATACCACAAGAGGCATTTCACCAACTACTGAAAGTTTCTTAG 2031 0.421 MGYLSKASKTLRQSNYLALLCNFNFYFNPLTSRITNERFPVRRELFCSQSRQYSTTTREKSTIDLRQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHSVNGDDFSDGKESPSFLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRVKAQLKSMFDLDPNDALLTSAKTGEGLEQILPAVIERIPAPPGRRESSLRMLLLDSYYDEYKGVICHVAVVDGVLSKGDKISSAATGQSYEALDVGIMHPELTPTGILLTGQVGYVVSGMRTTKEARVGDTIYHTRTSVETLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSITKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGANVISTVPTVPYTFEFSDGSKVEVQNPASLPSNPKQKVTACWEPTVIATIIIPSEYVGPVITLVSERRGQQLEYSFIDSQRVFMKYRLPLREIVVDFYNELKSITSGYASFDYEDSDYQQADLVKLDILLNGQPVDAMATIVHNTKAYRVGRELTEKLKTVIDRQMFEIIIQAAIGSKIIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLKVS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00547 676 PRINTS GTP-binding elongation factor signature 75 88 IPR000795 GO:0003924|GO:0005525
Vimu6g00547 676 PRINTS GTP-binding elongation factor signature 118 126 IPR000795 GO:0003924|GO:0005525
Vimu6g00547 676 PRINTS GTP-binding elongation factor signature 205 214 IPR000795 GO:0003924|GO:0005525
Vimu6g00547 676 PRINTS GTP-binding elongation factor signature 153 163 IPR000795 GO:0003924|GO:0005525
Vimu6g00547 676 Pfam GTP-binding protein LepA C-terminus 568 674 IPR013842 -
Vimu6g00547 676 CDD EF4_II 270 355 - -
Vimu6g00547 676 Gene3D - 446 559 - -
Vimu6g00547 676 Gene3D - 71 264 IPR027417 -
Vimu6g00547 676 Pfam Elongation factor G C-terminus 481 566 IPR000640 -
Vimu6g00547 676 Pfam Elongation factor Tu GTP binding domain 73 260 IPR000795 GO:0003924|GO:0005525
Vimu6g00547 676 Gene3D Translation factors 266 363 - -
Vimu6g00547 676 Gene3D Elongation Factor G (Translational Gtpase), domain 3 364 445 - -
Vimu6g00547 676 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 111 126 IPR031157 -
Vimu6g00547 676 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 71 263 IPR000795 GO:0003924|GO:0005525
Vimu6g00547 676 CDD LepA 74 262 - -
Vimu6g00547 676 FunFam Translation factor GUF1, mitochondrial 265 363 - -
Vimu6g00547 676 NCBIfam small GTP-binding protein domain 77 251 IPR005225 GO:0005525
Vimu6g00547 676 FunFam Translation factor GUF1, mitochondrial 560 634 - -
Vimu6g00547 676 FunFam Translation factor GUF1, mitochondrial 446 558 - -
Vimu6g00547 676 FunFam Elongation factor 4 70 264 - -
Vimu6g00547 676 CDD lepA_C 481 560 IPR035654 -
Vimu6g00547 676 PANTHER TRANSLATION FACTOR GUF1-RELATED 50 675 IPR006297 GO:0005525
Vimu6g00547 676 SUPERFAMILY EF-G C-terminal domain-like 480 574 IPR035647 -
Vimu6g00547 676 SUPERFAMILY EF-G C-terminal domain-like 372 449 IPR035647 -
Vimu6g00547 676 NCBIfam translation elongation factor 4 73 675 IPR006297 GO:0005525
Vimu6g00547 676 CDD EF4_III 371 446 - -
Vimu6g00547 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 280 IPR027417 -
Vimu6g00547 676 SUPERFAMILY Translation proteins 244 357 IPR009000 -
Vimu6g00547 676 Hamap Elongation factor 4 [lepA]. 69 676 IPR006297 GO:0005525
Vimu6g00547 676 FunFam Translation factor GUF1, mitochondrial 364 445 - -
Vimu6g00547 676 Gene3D - 560 634 IPR038363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00547 Vimu-Chr6 6641640 6653155 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00547 73 214 Eukaryotic Initiation Factors Gene Family AT1G56070 40.278 4.46e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00547 K21594 - gmx:100781092 1236.86