Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00546 ATGAAAAACAGACCAGGATTCCAAGAAATCCTAGACCACAACGATGGAGCATACTACAAGGACATAGTGTTCTTCTTCCTCGTAGAGCCATTGTTATGTCTGGTTGTTGTTGGCAGCAGATATCATAGTATAAAGACCAAACAGGAGCAACCTGATATCCTTGTTCCACTTGTTGTGTTCGATCTATCCATGTTGGACTTCGTAGGCCCAGTGTTAGACATCATAATTCGTTTGTGGGACTGTTGTGCCTACGTCCGTGATTATGAAGAGAACCTTTCTTGTTTGAGGGACATGACGTCTGACCTTCTAGGCCTTTGGGTTGATGTGAGTGTGAAGGTTCAACTGGCTGAGGACCAGCACCTGAGGCGTCTGAATGAAGTGAATGATTGGTTGGTTAAAGCTGAAGCCATGCAAAGAGAAGTTCAAGCTATTCAGCAGAGAGTTTCTCATGCTAGCAGATGTTTGATTAATTTTCCGACAAGCTTCAGGATGGGAAGGATTGTAAGTAAAAAAATAGGTGAGATTCGTGAACTTATTGACAAAGGGCACTTTGATGTAGTGGCTCAGGAAATGCCATATGCTGTGGTAGATGAAATCCCTCTGGAGGTCACAATAGGTCTAGAATCAACCTTTGATGAACTTGTTGAACGTTTTAATGATAATAATGTGGGAATTATTGGCTTGTTTGGCATGGGGGGTGTAGGAAAGACAACCCTGCTCAAAAAGTTCAACAATGAGTTTCTTCCCACAAAATTCTATGATGTAGTCATTTGGGTTGTGGTGTCTAAAGAAGCAGATGTAGGGAGTGTTCAACAAAGCATAGGAAACAAATTAAATGTTCCTGTTGGTAAATGGGGTGGTAAGAGCATTCATGACAGAGCTATTGTTTTATACAACTTTTTGAAGAGGAAGAAGTTTGTGTTGCTGCTAGATGATTTATGGGAGCGTATAGATCTTCTGAAGTCGGGGATTCCTCTCCCTGATACAAGAAATGGATCTAAAGTAATATTCACAACAAGGTCCATGGATGTTTGTAGGAACATGGAAGCCAACACATGCATCAAAGTAGACTGTTTAGCACCAAATGAAGCATTTGCATTGTTCAGAGAGAAAGTGGGTGAAGAAACTCTCAACTCTCATCCTGAAATATTTCATCTGGCTAAAATTGTGGCCAAGGAGTGTGAGGGACTTCCTTTAGCTCTCATCACTGTTGGAAGATCTATGGCTCGAAAGACTCTCCCTGAATGGAAACGAGCAGCACGAACTTTGAAGATTTATCCATCAAGATTTTCAGGTATGGTTGACTATGTTTATTGTTTGCTAGAGTTTAGCTATGACAGTTTACCAAGTGCCTCGCACAAGTCTTGTTTCTTGTACTGTTCCATCTTCCCTGAGGACTATGATATTAGAAAAGATGAACTCATTCAACTGTGGATTGGGGAAGGTCTTTTAGCTGAATTTGGTGATGATGTCTATGAAGCACGAATCCAAGGAGAAGAAATCATCGCAAGCTTGAAGTTTGCTTGTTTGTTGGAGGACAGTGAGAGAGAAAATAGGATTAAGATGCATGATGTGATCAGAGACATGGCTTTGTGGCTAGCTTGTGATCATGGATCCAAAACCAGGTTCTTGGTGAGAGATGGTGCATGCAGTGGTTCAGTTGAAACATATAATCAGGCAAAGTGGAAAGAAGTAGAGAAACTATCAATGTGGCGGCAAAGCATTCAGAAACTATCAGGAAAACAAGATTGCTCAAATCTCTTGACAATGCTCGTTAGAAATACCAAGATAACCAACTTCCCAGATGAGATCTTTCTGACTGCAAATCATCTTAGAGTGTTAGACCTGTCAGGTAATAAAAGAGTAAGAGAATTACCTTCCAGCATTGGGGAGTTAGTTCAATTGCAGCATTTGGATCTATCAGGTAGTGGCATACGAAAATTGCCAAGGGAGCTCCAGAACTTGAAAAAATTGAGGTGCCTGCTACTGAATTATATTTGCAACAGGCTTGTCTTTCCAAGGAATTTGATATCAAGTTTGGTGTCATTGCAAGTGTTTAGCAAATTACCATGGGAAGATCAGTTTATTCTTCCTGCCTTGGGGGAACCTGAGGAAGCTGTGTTGTTGAAAGAACTGGAATGCTTGGAATATCTTCAAGATATAAGCATTGCTCTCTTTTGCGTTTCTTCTATGCAAGTATTACTGAACTCTTCCAAGTTGCAAAGATGCATTAGACATCTCAGAGTACTTTCTCCATTCACTTCAACGCCACATATTATATTGTTCTCACTTTTGACAAAAATGCAACATCTAGAGGTATTATCCATGTCAGTTTCTTCTCCTTCAAGTTTAGACCATGTCAGGAAAAAGGGGTCTCCATCATCACAGTGTTCTATGACAGAGTGCATTCCCATGAGTTCAAAGCTTACTGAGCATGATTACATTGTTGGCCTCCGTGAGTTATCCCTTGAAGGGTGTGGCATGCAGAACTTGAATTGGCTCACTCGTGCTCAAAGCCTTCAACTCCTTAGAATATACAATTGTCCTTCCTTGGAAGAAGTCATAGGTGAAGAATTTGGCCATTCAGAAAATGTTTTTTCAAGTCTTGAAATTGTTGATCTAGATTCTTTACCAAAGTTAAGGAGCATATGCTCACAGGTTTTACAATTTCCTTGTCTTAAGGAAATCTGTGTAGCAGATTGTCCAAAGCTGATAAAGCTCCCTTTTGATTCCAATAGTGCAAGGAACAGTCTTAAGCACATTAATGGACAGAAAAGTTGGTGGCGTAAATTGCAGTGGGAAGATGAAGCCACAAGGGATCACTTTGCTTCAAGATATGTACCTTTGCGCAAAATTCGCAAAATACTCGTGGGAATTGTTAAAGATTTCAAATATGATGGGGATTTCAAACTACTACTGAACAATCTCAGAATACTGAGTGATGATACGAAAGCATTATACTTGACTAACTACATAGAGGCCAATGACGAAGAGGTTGAAATATATGTCGAACATGTTCCTAGTGAGACTCAAGTAATTAACTTTATTGTTGTTAGTGCTGTGGACGGAAACATGGAAGCCATGGAGGAAAAGGTTAATGTGGTCAAGGAAAAGGTGAACATGGCTGAGGAAGAGGCAAATGTAGCTGAGGAAGAGGTGAACATGACTGAGGAAGAGGCGAATGTGGTTGAGGAAGAGGCTAATGTGGTTAAGGAAGAGGGGAATATGGTTAAGGAGGAAGAAAAAGGGCCAGCTGAAGATAAAGTGGATGACAATGAAGAAGAAAGAATGACAAATGATGATGATGGGTTTGGGATGAAGAATGAGAGGGTGGTACATGATCTTGTAATGGATAGGAGAAGAAACAATGTTGTTGAAGGGTCATTTACCATTAATGAAGAAGTTGAAGACCATGACATAAATGAAGAATACAATACTGATTATTTGTCTTCGGATTTAGATAGTGATGACGGTGTGAATTTGAATAGGGAGAAGTTTTCAAAGTATAGAGCAGATGATATCAAGAAGACCTTCAAATTTAAATTGGGGATGAAATGTGGAATGGATTTTGGAAACAAAAGTGCAACTATACAGTGGATTGCACAAGTATTAGCAGATAGATTTATAAATGTGAGTAACATGACAGTCAACCAAATTATTGATGAAATTAAGAAGTCATACAATGTTGGAATAACTCCCTGGAAGGCTGGAAAAGCAAAGCAACTTGCAATGGATTTTTTAGTGGGAGATGGAGAACGACAATATGGTTGTCTATATGATTATGTTGCTGAATTGTTAAGAGTTAAGACTGCATCCTTCAATATTAAGGCCCTTGATTGTGGTAGATGGTTGTCAACTAAAGACAACATATGTAGCCAATTGTTAGTGGTAATGGGCAGAGACCCTAATGACCAACACCTGGAGGTGGTTTTGACACTGTTGCTGGTTGGTATTGGGGACATTGATTGTCAATGTTGGGGATTAATGGCATTTTTTGATGAGATTTTGAATGGGGTGGAGCACAAGTTCTGTTTAAGGCATTTGTACAACAATTACAAGAAGAAATTCAATGGAAAAGTTATCATTAGAGACCTTATGATGGGGGTTGCGCAGGCAACATTTTATCAGGAGTGGGAAAAAAATGGGAGGGATGGAAAGTTTGAGGTTACTCATGGGTTCACAATGGACAAGTTTGTACTTGACCTAAGTAAACCATACATGGAGTTGTTACTTTTGGGATTTGAGAACCCTGGAGATTATGTTCATCCAAATTACAAGAAACATGCTTATGAAAGGTTTTTATGGGCCTCAAATTTCCCAATCAATGGACAACAGTTATGGCCTAAAAGTAATTATCCAACACTACTTCCACCTATTTGTAAAATACCACCTGGGAGGCCTAAAAAGTTAAGAAGAAGGGAAGCCAATGAATATTTCAATCATTCAAAGTTGTTAAAGAAAAACATTGTTATGAAGTGTAGCAGTTGTAATCAATATGGACATAATGTTAAAAGATGTAGAAAGGGAATGAAAACCAGAAAGAAGAGCGAAATCTGCATCAACAATAGTAATAAAGCAGGTAGAACAACAACAAGAACATCCACAAGAAGCATGGCTGCACAAGGTCTCAAGCTAGTAGCAACACAACCTTAG 4653 0.3939 MKNRPGFQEILDHNDGAYYKDIVFFFLVEPLLCLVVVGSRYHSIKTKQEQPDILVPLVVFDLSMLDFVGPVLDIIIRLWDCCAYVRDYEENLSCLRDMTSDLLGLWVDVSVKVQLAEDQHLRRLNEVNDWLVKAEAMQREVQAIQQRVSHASRCLINFPTSFRMGRIVSKKIGEIRELIDKGHFDVVAQEMPYAVVDEIPLEVTIGLESTFDELVERFNDNNVGIIGLFGMGGVGKTTLLKKFNNEFLPTKFYDVVIWVVVSKEADVGSVQQSIGNKLNVPVGKWGGKSIHDRAIVLYNFLKRKKFVLLLDDLWERIDLLKSGIPLPDTRNGSKVIFTTRSMDVCRNMEANTCIKVDCLAPNEAFALFREKVGEETLNSHPEIFHLAKIVAKECEGLPLALITVGRSMARKTLPEWKRAARTLKIYPSRFSGMVDYVYCLLEFSYDSLPSASHKSCFLYCSIFPEDYDIRKDELIQLWIGEGLLAEFGDDVYEARIQGEEIIASLKFACLLEDSERENRIKMHDVIRDMALWLACDHGSKTRFLVRDGACSGSVETYNQAKWKEVEKLSMWRQSIQKLSGKQDCSNLLTMLVRNTKITNFPDEIFLTANHLRVLDLSGNKRVRELPSSIGELVQLQHLDLSGSGIRKLPRELQNLKKLRCLLLNYICNRLVFPRNLISSLVSLQVFSKLPWEDQFILPALGEPEEAVLLKELECLEYLQDISIALFCVSSMQVLLNSSKLQRCIRHLRVLSPFTSTPHIILFSLLTKMQHLEVLSMSVSSPSSLDHVRKKGSPSSQCSMTECIPMSSKLTEHDYIVGLRELSLEGCGMQNLNWLTRAQSLQLLRIYNCPSLEEVIGEEFGHSENVFSSLEIVDLDSLPKLRSICSQVLQFPCLKEICVADCPKLIKLPFDSNSARNSLKHINGQKSWWRKLQWEDEATRDHFASRYVPLRKIRKILVGIVKDFKYDGDFKLLLNNLRILSDDTKALYLTNYIEANDEEVEIYVEHVPSETQVINFIVVSAVDGNMEAMEEKVNVVKEKVNMAEEEANVAEEEVNMTEEEANVVEEEANVVKEEGNMVKEEEKGPAEDKVDDNEEERMTNDDDGFGMKNERVVHDLVMDRRRNNVVEGSFTINEEVEDHDINEEYNTDYLSSDLDSDDGVNLNREKFSKYRADDIKKTFKFKLGMKCGMDFGNKSATIQWIAQVLADRFINVSNMTVNQIIDEIKKSYNVGITPWKAGKAKQLAMDFLVGDGERQYGCLYDYVAELLRVKTASFNIKALDCGRWLSTKDNICSQLLVVMGRDPNDQHLEVVLTLLLVGIGDIDCQCWGLMAFFDEILNGVEHKFCLRHLYNNYKKKFNGKVIIRDLMMGVAQATFYQEWEKNGRDGKFEVTHGFTMDKFVLDLSKPYMELLLLGFENPGDYVHPNYKKHAYERFLWASNFPINGQQLWPKSNYPTLLPPICKIPPGRPKKLRRREANEYFNHSKLLKKNIVMKCSSCNQYGHNVKRCRKGMKTRKKSEICINNSNKAGRTTTRTSTRSMAAQGLKLVATQP 1550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00546 1550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 460 IPR027417 -
Vimu6g00546 1550 Gene3D Ribonuclease Inhibitor 548 926 IPR032675 -
Vimu6g00546 1550 FunFam Probable disease resistance protein At5g66910 358 444 - -
Vimu6g00546 1550 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 112 920 - -
Vimu6g00546 1550 FunFam Probable disease resistance protein At1g61300 187 352 - -
Vimu6g00546 1550 Pfam Leucine rich repeat 586 643 IPR001611 GO:0005515
Vimu6g00546 1550 Pfam NB-ARC domain 209 446 IPR002182 GO:0043531
Vimu6g00546 1550 SUPERFAMILY L domain-like 512 923 - -
Vimu6g00546 1550 Gene3D - 193 358 IPR027417 -
Vimu6g00546 1550 Gene3D - 359 444 IPR042197 -
Vimu6g00546 1550 Coils Coil 127 147 - -
Vimu6g00546 1550 MobiDBLite consensus disorder prediction 1064 1092 - -
Vimu6g00546 1550 MobiDBLite consensus disorder prediction 1063 1105 - -
Vimu6g00546 1550 PRINTS Disease resistance protein signature 300 314 - -
Vimu6g00546 1550 PRINTS Disease resistance protein signature 394 408 - -
Vimu6g00546 1550 PRINTS Disease resistance protein signature 606 622 - -
Vimu6g00546 1550 PRINTS Disease resistance protein signature 225 240 - -
Vimu6g00546 1550 FunFam Probable disease resistance protein At1g63360 445 532 - -
Vimu6g00546 1550 Gene3D - 445 531 IPR036388 -
Vimu6g00546 1550 Coils Coil 1025 1082 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00546 Vimu-Chr6 6627254 6634145 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00546 205 530 WRKY Transcription Factor Family AT5G45050 25.797 2.64e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00546 - K13459 vra:106758404 1801.56