Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00535 ATGGCAGTGGTGAGTCCTGTGCTTGCAACATCACAAAGGATGGGTTCTGTGAGGTCACCTTCTGATGCTAGTGGGGAAATTTTGGAGGAGCCTAATCCAGGTGTGGTTGATCAGCCAATCTATGTTGCTGTGGCAAAAGAAGTGAAGGAGAGCAAATCAAATCTGATATGGGCAATACAACACTCCGGAGGAAAGAGGATTTGCATTCTTTATGTTCATGTTCGTGCAACAATGATCCCCCTACTGGGAGGTAAATTCCCTACAAGTGCACTAAAAGAGGAGCAGGTTCAAGCATACTGGGAAGAAGAAAAGCAAAACATGCATAGGACTCTGGATGAATATCTTCAAATCTGTCAACGGATGGGGGTGCGAGCAGAAAAATTGCATATTGAAATGGATAGCATTGAAAAAGGAATTATAGAGCTTGTATCTCAGCATGGCATCCGAAAGCTTGTAATGGGAGCAGCATCAGATAAGTACTATAATAGGAGAATGATGGACCTTAGATCTAAGAAAGCCATATATGTGTGTAAACAAGCTCCAGCTTCTTGTCACATACAGTTTGTCTGCAAAGGGCACCTTATACACACAAGGGATCACAGTTTGAATGAAGGTAATGTAGAGGTTGCATCTCCTTTGGTGCAGCAAGTGCCAAACTCTGTGAGAACTTTCAGATCACAGTCTGTTACACTGGGGCAAGGTCGCCGAGGAAATCTAACCAATGATGCGCGCATACTAAGGTCTGCCAGTGATGGACATGTAGCAACCTTTCCAGCTGTTTCTTCTCCAGAAGAAACTGTAGGGTTTTCAACTCCACGTGACAGGATGGGTACAGAAGTAAGTTCTGATGAATCAGAGAGGCTGTCAATGATGAGTCCTTCTGGCTTGTCAATATCCTCTGACAGTGCAGTTGATCTAGCTTTGACCCGAGGATTAATTACTGAAAGCAGTGAGAATGCATTAGAGTTGACTATGAGTCAGCTGGTTATAGAGGATCTTCATCATTCATCTCCTCCTAGTACACTGGATGGTGGAATAGATGACACTATCTACGACCAGCTTCAACAAGCTATGACCGAAGCAGAGGATGCTTCACTAACTGCATATAAAGAAACTGTCAGACGTAGGAATGCTGAAAAAGAAGCCTTTGAAGCTATACGCAAGGCTAAAGCTTCTGAAATCTTATATACGGAAGAGTTGAACCTGAGGAAATTGGCTGAGGAAGAACTTAGGAAAGAAAAAGAAGAACTTGAGAATGCTAAGAGACTGAGAGACAAAGTTAGGGAAGAACTCCACCTCGCCCTTGATCAGAAGGCATCTCTGGAGAGTCAGATTGCATCATCTGAACTTATCATAAAGGAGCTGGAGCAGAAGATTGTATCTGCTGTGGATCTGTTACAGAGCTACAAGAATGAACGAGAGGAATTGCAGATTCAGCGTGATAATGCTTTGAGAGAGGCCGAAGAATTGAGGAAAAAGCAAGGAGAGGCCTCAAGCTCCCATGTCCCTCAATTGTTCTCAGAATTCTCATTTTCAGAGATTAAAGAAGCAACAGATAACTTCAATCCATCCTTAAAAATTGGTGAAGGTGGATATGGAAGTATATTTAAAGGTGTCTTGAGTTACACTGAGGTGGCTATAAAAAGATTGCACTCTGACAGCATGCAAGGACCCTTGGAGTTTCAACAGGAGGTTGATGTGCTGAGCAAACTAAGGCATCCCAATCTTATCACACTCATTGGAGCCTGTCCAGATGCATGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTCGAAGACCGCCTTGCCTGCAAGGATAATACCCCTCCATTATCATGGCAAACTCGAATCCGTGTTGCTACTGAACTATGCTCTGCCCTCATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTGCATGGTGACTTGAAACCGTCCAACATTCTCCTTGATGCAAACCTTATCAGCAAGCTTAGTGACTTTGGAATATGTCGTATATTATCGAACTGTGAGAGTTCCAGTAGCAATTCTACAGAGTTTTGGAAAACTGACCCAAAGGGAACATTTGTCTACATGGATCCTGAGTTTCTTGCCTCAGGGGAACTTACTCCGAAGTCAGACGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACAGGGAGACCAGCCTTGGGAATAACAAAGGAAGTGAAATATGCATTAGATACTGGAAAGTTGAAATCCCTTTTGGATCCTGTGGCTGGCGACTGGCCATTTGTGCAGGCTGAACAATTGACTCGCTTGGCTTTGAGATGTTGTGATATGAACCGAAAGAGCCGTCCAGATCTTTATTCTGATGTCTGGAGGATACTTGATGCAATGAGAGTTTCTTCTGGAGGCACAAACTCCTTTGGACTAAGTTCTGAAGGACTTTCACAACCTCCATCATATTTTATTTGCCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCAGCAGATGGTTTTACATATGAAGCTGAGGCTATACGAGGATGGCTTGATGGTGGTAATGACAACTCACCAATGACTAATGGTAAGCTTGCACATCACAATCTTGTTCCCAATCGTGCTCTTCGCTCTGCAATCCATGACTGGCTTCAAAACCACTGA 2640 0.4341 MAVVSPVLATSQRMGSVRSPSDASGEILEEPNPGVVDQPIYVAVAKEVKESKSNLIWAIQHSGGKRICILYVHVRATMIPLLGGKFPTSALKEEQVQAYWEEEKQNMHRTLDEYLQICQRMGVRAEKLHIEMDSIEKGIIELVSQHGIRKLVMGAASDKYYNRRMMDLRSKKAIYVCKQAPASCHIQFVCKGHLIHTRDHSLNEGNVEVASPLVQQVPNSVRTFRSQSVTLGQGRRGNLTNDARILRSASDGHVATFPAVSSPEETVGFSTPRDRMGTEVSSDESERLSMMSPSGLSISSDSAVDLALTRGLITESSENALELTMSQLVIEDLHHSSPPSTLDGGIDDTIYDQLQQAMTEAEDASLTAYKETVRRRNAEKEAFEAIRKAKASEILYTEELNLRKLAEEELRKEKEELENAKRLRDKVREELHLALDQKASLESQIASSELIIKELEQKIVSAVDLLQSYKNEREELQIQRDNALREAEELRKKQGEASSSHVPQLFSEFSFSEIKEATDNFNPSLKIGEGGYGSIFKGVLSYTEVAIKRLHSDSMQGPLEFQQEVDVLSKLRHPNLITLIGACPDAWALVYEYLPNGSLEDRLACKDNTPPLSWQTRIRVATELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSNCESSSSNSTEFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYALDTGKLKSLLDPVAGDWPFVQAEQLTRLALRCCDMNRKSRPDLYSDVWRILDAMRVSSGGTNSFGLSSEGLSQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGNDNSPMTNGKLAHHNLVPNRALRSAIHDWLQNH 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00535 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Vimu6g00535 879 ProSiteProfiles Protein kinase domain profile. 521 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00535 879 FunFam receptor-like protein kinase FERONIA 484 593 - -
Vimu6g00535 879 PANTHER OS02G0152300 PROTEIN 40 873 - -
Vimu6g00535 879 CDD STK_N 39 192 - -
Vimu6g00535 879 Gene3D HUPs 35 157 IPR014729 -
Vimu6g00535 879 Gene3D Phosphorylase Kinase; domain 1 491 593 - -
Vimu6g00535 879 Pfam Protein kinase domain 525 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00535 879 Gene3D Transferase(Phosphotransferase) domain 1 594 797 - -
Vimu6g00535 879 MobiDBLite consensus disorder prediction 1 29 - -
Vimu6g00535 879 CDD RING-Ubox_WDSUB1-like 810 865 - -
Vimu6g00535 879 ProSitePatterns Protein kinases ATP-binding region signature. 527 548 IPR017441 GO:0005524
Vimu6g00535 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Vimu6g00535 879 MobiDBLite consensus disorder prediction 261 296 - -
Vimu6g00535 879 Coils Coil 396 493 - -
Vimu6g00535 879 SUPERFAMILY Protein kinase-like (PK-like) 498 779 IPR011009 -
Vimu6g00535 879 SUPERFAMILY RING/U-box 803 878 - -
Vimu6g00535 879 ProSiteProfiles U-box domain profile. 808 879 IPR003613 GO:0004842|GO:0016567
Vimu6g00535 879 SMART Ubox_2 812 875 IPR003613 GO:0004842|GO:0016567
Vimu6g00535 879 SMART serkin_6 521 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00535 879 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 53 159 - -
Vimu6g00535 879 Pfam U-box domain 810 879 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00535 Vimu-Chr6 6539901 6546111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00535 1 879 U-box Gene Family AT2G45910 52.483 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu6g00535 Pkinase 2.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00535 - - gmx:100807515 1471.83