LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g00505	ATGGCAACTGATATGCAAAGGCTTGTGGGAACGAGTGAGGATGATGAAGAATTGGGAATGGATGTGAAGGATGAGGATGATGATGAAGATGATTACGAGGAAAATGGAGGTGAGCAGAGAAATGCTTCAGGGATGGTGGGGATTGATGGTGGGAATGAGATAGGAACTGCCACTGGTGACAACAGATTTTCACAGCACCAGCAGTTTCATGAACAAGTAGGTACCCCTGGTGGAGGTACTCGAAGATCTAGGCCGGTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGCCGGAGGGCCATCACTGCAAGGATCTTGGCTGGGCTTCGCAGGCATGGCAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAGGCTGGATGGGTGGTTCTTCCAGATGGTACTACTTTTCCCTCAAGATCTCAGGCATCATATGTGGTTTCCCCAAGAATGGGAGGACTATGGCTTGATCATTATGTTTTTTTGTTAACCTGGTTATTTCACTTTGAAACTCCCCTATCAACAATATTTGTTTTGGAGGGTCAAAAGCCAGCTGGTGGTAATTCTACAATCCTCACTTCATCATCTCCCCATGTGGCTTCGCAACAAACTCCATCCCCTTCTCTCAGGGGAGTTGCTTCTGGCTATCGGAGCCCTTTAGAGTATAGTGCATGTCAAACAAAAGGTGTTTTTATGCCAACTCCATCTCCTTATGATCTATCCTCAACTTCCCGATCTCAAACATCTATTGTAGGGGATGGAGAAGCACAAAGAGACAACCATCCTCTGATTGGTGGTTCAATTGATAATGCTGATGAGAAACAGGCAGATAGCATGAACTGGTGTCAATTTGATTATTCATTGTATGGTGCCTTTGCAAGGTATATCTTGGCATTGTTTTATACTTCTTGTTTGCAGATTGCTGACTTGCCTGCTAGATTACCCGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTTCCGTTAGGGGTGATCAATATAAAATGTGAGCTTGTTGATCCTGATGGTTTGTTAAAGCAGCTGAGGGTGTTGAAATCAGTGCATGTCGACGGTGTTATGGTAGATTGTTGGTGGGGAATCGTGGAGGCCCATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAAGTTAAGCTTAAGCTACAGGTTGTTATGTCATTTCATGAATGTGGTGGGAATTTTGGTGATGATGTTTGTATTCCATTGCCGCATTGGGTTGCCGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGGCACAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGAGTTTTAAGAGGACGTACCGCTGTGGAGGTGTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGAGGATGGCTTAATCTCCATGATTGAAGTTGGACTCGGTCCATGTGGAGAGCTAAGATATCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGTTATGATCATTATATGTTGAAAAGTCTTAGGAAAGCTGCAGAAGCAAGAGGTCACGCTATTTGGGCTAGAGGACCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGTGTTACTGCAAAGACTGCAAGTCATGCAGCTGAATTAACTGCTGGGTACTATAACCCATGCAATCGTGATGGCTATGCTGCAATTATGACAATGTTAAAGATAAATGGAGTTAGCTTGAACATTCCTTGTGTTGAGTTGCACACATTAAACCAACATGAGGGTTTTCCAGAGACATTTGCAGATCCTGAGGGATTAGTCTGGCAAGTGTTGAATGCCGGTTGGGATGTTGACCTACCAGTTACTAGTCAGAATGGATTTCCTTGCCTAAACAGAGTTAGCTATAACAAGGTTTTGGATCATGCCAAGCCCATGAATGATCCAGATGGAAGGCACTTTTCATCGTTTACTTACCTGAGGCTTAGTCCACTTCTTATGGAACGACAAAACTTCATAGAGTTTGAACGATTTGTCAAAAGGATGCATGGGGAAGCTGTTCTTGATCTTCAGGTATAA	2289	0.4338	MATDMQRLVGTSEDDEELGMDVKDEDDDEDDYEENGGEQRNASGMVGIDGGNEIGTATGDNRFSQHQQFHEQVGTPGGGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQASYVVSPRMGGLWLDHYVFLLTWLFHFETPLSTIFVLEGQKPAGGNSTILTSSSPHVASQQTPSPSLRGVASGYRSPLEYSACQTKGVFMPTPSPYDLSSTSRSQTSIVGDGEAQRDNHPLIGGSIDNADEKQADSMNWCQFDYSLYGAFARYILALFYTSCLQIADLPARLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSVHVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVREVKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGLISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDHYMLKSLRKAAEARGHAIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCVTAKTASHAAELTAGYYNPCNRDGYAAIMTMLKINGVSLNIPCVELHTLNQHEGFPETFADPEGLVWQVLNAGWDVDLPVTSQNGFPCLNRVSYNKVLDHAKPMNDPDGRHFSSFTYLRLSPLLMERQNFIEFERFVKRMHGEAVLDLQV	762

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g00505	762	Pfam	BES1/BZR1 plant transcription factor, N-terminal	79	253	IPR008540	-
	Vimu6g00505	762	Pfam	Glycosyl hydrolase family 14	337	747	IPR001554	GO:0000272\|GO:0016161
	Vimu6g00505	762	SUPERFAMILY	(Trans)glycosidases	330	758	IPR017853	-
	Vimu6g00505	762	PRINTS	Plant beta-amylase signature	743	757	IPR001371	GO:0000272\|GO:0016161
	Vimu6g00505	762	PRINTS	Plant beta-amylase signature	494	503	IPR001371	GO:0000272\|GO:0016161
	Vimu6g00505	762	PRINTS	Plant beta-amylase signature	728	742	IPR001371	GO:0000272\|GO:0016161
	Vimu6g00505	762	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	321	755	IPR001554	GO:0000272\|GO:0016161
	Vimu6g00505	762	Gene3D	Glycosidases	325	761	-	-
	Vimu6g00505	762	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	389	407	IPR001554	GO:0000272\|GO:0016161
	Vimu6g00505	762	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	637	660	IPR001554	GO:0000272\|GO:0016161
	Vimu6g00505	762	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	677	699	IPR001554	GO:0000272\|GO:0016161
	Vimu6g00505	762	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	411	432	IPR001554	GO:0000272\|GO:0016161
	Vimu6g00505	762	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	504	526	IPR001554	GO:0000272\|GO:0016161
	Vimu6g00505	762	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	368	382	IPR001554	GO:0000272\|GO:0016161
	Vimu6g00505	762	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	619	630	IPR001554	GO:0000272\|GO:0016161
	Vimu6g00505	762	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	577	596	IPR001554	GO:0000272\|GO:0016161
	Vimu6g00505	762	MobiDBLite	consensus disorder prediction	1	94	-	-
	Vimu6g00505	762	MobiDBLite	consensus disorder prediction	17	35	-	-
	Vimu6g00505	762	MobiDBLite	consensus disorder prediction	57	74	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g00505	Vimu-Chr6	5789442	5794667	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g00505	1	759	Glycoside Hydrolase	AT2G45880	59.197	0.0	890

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Vimu6g00505		Glyco_hydro_14	5e-93	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g00505	K01177		-	gmx:100805560	1245.34

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu6g00505	6	5789442	5794667	Vimu6g00505	6	5789442	5794667	ECH