Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00493 ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGGGGAATTCCTGGATCTGGAGCACAACCCGAGTTGCATATGTCACCTAATATTCGACCACTCTCCAATCCGAATCTACCATTTCAATCCAGCATTGGTGGTGGTTCCATTGGATCGACATTGCCATTAGAGTCTTCTTCAATTTCAGCTCATGGAGTCAATATGGGAGCTCCTCCTGGGGCACCTCCAGGGGAGCCTGTTAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGCACTGATGGAACTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTGGTCACCCTGGAGCCTTGGGACAGAACCAGAAACGTGGCAGAGGCCGACCACCTGGTACTGGAAAAAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTTTGTATTTTGTCAGCCAATGGCGCCGTGTCAACTGTCACACTTCGACAGCCATCAACTTCAGGCGGCACTGTCACATACGAGGGGCGCTTCGAGATAGTGTGCCTTTCAGGCTCTTATTTGGTCACTGATAGTGGTGGCTCACGCAATCGAACTGGTGGACTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGAGGAGTTGGTGGAGTTCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGTTTTCAATGGGGTGGATCAAAGACAAAGAACAAGAAGAAGGAAAGCGCGGAAGTTGCAGAAGTTGCTGTGGAGTCAGATCATCAGGGAGTTCATAATCCAGTGGCACTGAACAGCATCTCACCAAATCAAAATCTATCTCCAAACCCTTCATCTTTGAGTCCTTGGTCTCAATCGCGGCCGTTGGATATGCGTAATTCCCATGTGGACATTGACTTGATGCGTGGGTGA 1026 0.4864 MDRGDQMALSGSYYMQQRGIPGSGAQPELHMSPNIRPLSNPNLPFQSSIGGGSIGSTLPLESSSISAHGVNMGAPPGAPPGEPVKRKRGRPRKYGTDGTVSLALTPTPTSSGHPGALGQNQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFQWGGSKTKNKKKESAEVAEVAVESDHQGVHNPVALNSISPNQNLSPNPSSLSPWSQSRPLDMRNSHVDIDLMRG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00493 341 CDD DUF296 153 267 IPR005175 -
Vimu6g00493 341 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Vimu6g00493 341 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Vimu6g00493 341 FunFam AT-hook motif nuclear-localized protein 1-like 154 285 - -
Vimu6g00493 341 MobiDBLite consensus disorder prediction 33 69 - -
Vimu6g00493 341 MobiDBLite consensus disorder prediction 290 341 - -
Vimu6g00493 341 MobiDBLite consensus disorder prediction 297 329 - -
Vimu6g00493 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 66 321 IPR039605 GO:0003680
Vimu6g00493 341 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Vimu6g00493 341 MobiDBLite consensus disorder prediction 100 117 - -
Vimu6g00493 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Vimu6g00493 341 Gene3D - 154 297 - -
Vimu6g00493 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Vimu6g00493 341 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00493 Vimu-Chr6 5670541 5676530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00493 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 48.753 1.55e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00493 - - gmx:100814615 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00493 6 5670541 5676530 Vimu6g00493 6 5670541 5676530 ECH
Vimu6g00493 6 5670541 5676530 Vimu9g00331 9 3946787 3951376 PCT