Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00479 ATGGTCACAACAGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCGGTTCATCTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCCGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCAATAGAACAGCTGATTCAATTTCTTCCTGGAACCCGTCAAATTCTGATGTTTTCTGCTACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTGCGTAAGCCATACGTTATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATATTATGCATTTGTTGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGTCAATCATTTTCTGCAATTCTGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACTGAACTTGGGTATTCGTGTTTCTATATCCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTCTTCACTAGGGGAATAGACATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCTAAGAACTCAGAAACCTACCTACACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTAGGTTTAGCAGTGAATTTGATCACCTATGAGGATCGCTTCAATTTATATAGAATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCACCACACATTGATCAAGCAATATATTGCCGGTGA 813 0.3936 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPGTRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00479 270 SMART helicmild6 147 228 IPR001650 -
Vimu6g00479 270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 250 IPR027417 -
Vimu6g00479 270 Pfam Helicase conserved C-terminal domain 133 228 IPR001650 -
Vimu6g00479 270 CDD SF2_C_DEAD 113 237 - -
Vimu6g00479 270 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 269 - -
Vimu6g00479 270 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 48 56 IPR000629 -
Vimu6g00479 270 FunFam ATP-dependent RNA helicase DDX6 106 270 - -
Vimu6g00479 270 Gene3D - 110 270 IPR027417 -
Vimu6g00479 270 Pfam DEAD/DEAH box helicase 3 90 IPR011545 GO:0003676|GO:0005524
Vimu6g00479 270 Gene3D - 1 109 IPR027417 -
Vimu6g00479 270 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 102 IPR014001 -
Vimu6g00479 270 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 112 267 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00479 Vimu-Chr6 5518206 5520392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00479 5 263 Eukaryotic Initiation Factors Gene Family AT1G72730 38.722 2.76e-61 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00479 K12614 - pvy:116118171 537.339