Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00476 ATGGGAAGAACACCATGTTGTGACAAAAAGGGTTTGAAGAAGGGACCTTGGACAGCTGAAGAAGATGAAATTCTTGCTAGTTATATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTCTTCTTCGTTGTGGCAAGAGTTGCAGGCTTAGGTGGACAAACTATCTCAGACCTGACATCAAGCGTGGTCCTTTTACTCAAGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCTTCTCAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTATGGAACACCCACTTGAAGAAGCGTCTCAAAAGCATGGGACTTGACCCTCGAACTCACGAGCCATTGGTCTCATCTCCATCTTACCCCTTCCACAAGGCACATGCATCTGTGTCCACACGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCTGAGGCCAGGCTCTCAAATGAGTCAACAAGGTTCAGCCACAACACCACCAATCCTAATTCAGACGCCAAAACCACTGACTCTGACTACTTTCTCCGCATTTGGAACTCTGAAGTTGGAGAGGCATTTCGCAATGTTGTTGTTCATCACAAAGCTGATGACAACAAAATCACCACTACCAGCTCCTGCCCCAGTCCCCTCTCTGCAGGATCATCTTCCAACAAGTGTGACTCAGTTGCAATAAATGCAGATTTGGCTTCCATTGCACAAGAAACCACGCCCTCTAACATTGTGAAACAAGAGTTGGAGTGGAGGATTCGTGGATCTGATTCTTCAAGCTCTAATGACATGGAGGATTCATCAGACACTGCTTTGCAGCTCTTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTAGAAGGAAACTCTTTTATGTGTCCACTTTAG 927 0.4563 MGRTPCCDKKGLKKGPWTAEEDEILASYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTQEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPRTHEPLVSSPSYPFHKAHASVSTRHMAQWESARLEAEARLSNESTRFSHNTTNPNSDAKTTDSDYFLRIWNSEVGEAFRNVVVHHKADDNKITTTSSCPSPLSAGSSSNKCDSVAINADLASIAQETTPSNIVKQELEWRIRGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEGNSFMCPL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00476 308 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vimu6g00476 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vimu6g00476 308 FunFam MYB transcription factor 70 117 - -
Vimu6g00476 308 Gene3D - 70 132 - -
Vimu6g00476 308 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vimu6g00476 308 SMART sant 67 115 IPR001005 -
Vimu6g00476 308 SMART sant 13 64 IPR001005 -
Vimu6g00476 308 Gene3D - 11 68 - -
Vimu6g00476 308 CDD SANT 16 62 IPR001005 -
Vimu6g00476 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 236 - -
Vimu6g00476 308 FunFam Myb transcription factor 11 68 - -
Vimu6g00476 308 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vimu6g00476 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vimu6g00476 308 CDD SANT 70 113 IPR001005 -
Vimu6g00476 308 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vimu6g00476 308 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00476 Vimu-Chr6 5487577 5490174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00476 1 302 MYB Transcription Factor Family AT3G61250 64.706 1.79e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g00476 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00476 K09422 - gmx:100800408 540.421