Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00469 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTACACCTTACCATAAGAACTGCTTCCGATGCAGTCACTGCAAGGGATACCTCACGATGAGCACATACTCTTCAATGGACGGTGTCCTCTACTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGACAGGTAACATGCTACCATCTTCTAATCCCAGTAAGTGCAAATTCATTTGCACCTGTAATTTTCTATTGGCATGGCTAACATGCTATGCGTTTTTTCATGATTGTAATTGCGGCACAGCAAGGTCTTCTGAAAAACAAAATGAGATGATGACACTGGAAGGAGAATGCTATCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTCACACATTCCTCCTATGCTTCCCTAGACGGTGTCCTCTACTGCAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAACTACCATCATGTACTCCAAGCTGCTGCAAACAGGAAGAATGCCACACCGCCTCCTGAACCAGCCGAAGAAGAAGAAGAACCACCAAAGCCAGAGGAAGCTGAACAGGAAGAAACAGAAGAAAAATCCTAA 654 0.4388 MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGNMLPSSNPSKCKFICTCNFLLAWLTCYAFFHDCNCGTARSSEKQNEMMTLEGECYHKNCFRCAHAGCHLTHSSYASLDGVLYCRHHFQQLFMEKGNYHHVLQAAANRKNATPPPEPAEEEEEPPKPEEAEQEETEEKS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00469 217 Pfam LIM domain 122 169 IPR001781 -
Vimu6g00469 217 Pfam LIM domain 10 65 IPR001781 -
Vimu6g00469 217 MobiDBLite consensus disorder prediction 183 217 - -
Vimu6g00469 217 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vimu6g00469 217 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vimu6g00469 217 SMART lim_4 9 61 IPR001781 -
Vimu6g00469 217 SMART lim_4 110 165 IPR001781 -
Vimu6g00469 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 140 179 - -
Vimu6g00469 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vimu6g00469 217 ProSiteProfiles LIM domain profile. 112 172 IPR001781 -
Vimu6g00469 217 Gene3D Cysteine Rich Protein 5 72 - -
Vimu6g00469 217 Gene3D Cysteine Rich Protein 110 176 - -
Vimu6g00469 217 FunFam LIM domain and actin-binding 1 4 74 - -
Vimu6g00469 217 MobiDBLite consensus disorder prediction 199 217 - -
Vimu6g00469 217 PANTHER OS06G0237300 PROTEIN 125 208 - -
Vimu6g00469 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00469 Vimu-Chr6 5456706 5458821 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vimu6g00469 LIM 1.3e-07 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00469 - K09377 gmx:100779513 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00469 6 5456706 5458821 Vimu6g00469 6 5456706 5458821 ECH
Vimu6g00469 6 5456706 5458821 Vimu9g00353 9 4223860 4225517 PCT