Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00466 ATGCAATACCGCAAGAGAGAAAAAGGAGAGGAGGAAGACAATGACGTTATCAAAAACAACAATGCAATTAAAAGAAGAGGTGAAGCAAGAGAAAAAGGAGAAGATGAAGACGCGATATCAGAAACTGAATGCCGCGAAGAGAAGCTGAACCGATTGACGTTTGATTTCTTGTCAGGGATCTTCACGACAGTTAATAAAATTATTATTATTATTATTATTATTATTATTATAACATGTGTTAGAAATTTGTGCAATAAGAGAGTTAATGTGCAAGTTTTTCTCGGCCTTGTTTCAGATTTTTTTTTCAAAGGAACACGGAGTAAGTGTTGTAGTCCTGCGGAGAAGGAAAACCTTTCAAACTTGGAAGACTACGCCTGCCTGCCATCCATTCCTTTTTCATCATTCTCTGTTTTTTGTGATCAATCCTCACGCACTGTTCTTCTCACTTCCAAACAACCCCTATCCTTCGATGGACAGCCGAATGAGTGTTTTGCATCTGATTATTATGAAAATCGCGTTGGATTTGGCAGTTTTTCAATTTTTTTGCTTCGGATGATTTTGGCGCACGTGTTGGTGTGTGTGGATACTGAATGCGGCAATCTCGTTGTATTGATTGAGTTAATTGTTTTAGGTGAATGTGGAGTGTGCGTCGTATTAGTCGTTTCTGATTTTGTCGAGGAGTATGAACATGGATATGGCTTGTGGTTTGCCGCAGTCAAGGGTGTACGGAGGTATTGGGACGAGTTACAGACACAGATCAGGAGAGGTTTTGGTTGTGCTGGTTTTGACAGAAGTGTTTCAAAATTTCGTGTTAGTGGAGTGAGTGCTTCTGCTTGTTGGAGTAATTCCAGGGTGTTTACTGGTAGGGAGTTTAAAGTTTTGAATATTAAGAGAAGTTTGTCTTGTAAGAATAATAATCTTTTTACGGGGTCTAGAGTGATTTGGTCCAAGTGCCAGGGTAATGATTCTTTAGCTTATGTTACTGGCAACGGTCGGACTGTTGATTATGTGGAAGGTTCAGATGAGGATGCAGGATTGGGGCCTGTTTCTAGTGTTGAACTTGATGCACCTTTGGAAGAAGAAGAGCAAGCCGGAAGAAAAGAGGGAGGGAGTGAAATAGGATCAGAGGAACTAAGTGTGGATGAATTGAAAGAACTATTGCAAAAGGCCAGGAAGGAGCTAGAAGTAGCTCAAATAAATAGTACCATGTTTGAGGAAAAGGTTAAAAAAATATCAGAGACTGCCATTTCTTTGCATGATGAAGCTGTGATTTCTTGGAATGCTGTTAATTCTACCCTTGACACCATCAAAGAAGTAGCTAATGAAGAGCTTATGGCCAAAGAAGCTGTCCAAACTGCAACAATGGCTCTTTCATTAGCTGAGGCAAAACTTCAAGTAGCCATAGAATCTTTGGAGCCTACAAAAGAAGTTCCTGATTCAACACAAGGTTCTAATGAGAGCAATGCTGATAAGGACATGGAGGAACATGAGAAAGCTATTTTGTTTGCTGAAGCAGATATCAAGGAATGCCAGGCTAACTTAGCCAATTGTGAGGCAGAGCTGAGGCGCTTGCAAAATAGGAAGGAAGAGTTGCAGAAGGAAGTGAGCAAATTGCAAGAAATTGCTGAAAATGCTCAGCTGAATGCTGTGAAAGCTGAAGAGGATGTTACAAACATAATGCTTTTGGCTGAACAAGCTGTTGCCTTTGAACTTGAGGCAACAAAACGTGTAAATGATGCAGAGATTGCCTTACAACGAGCAGATAAGTCTAATTCTAATTCGAATACTGATACGATAGAAACTACCCAAGCACCGGATGTTGAGGCTATTCTTGAGGAGGAAAAAGTGGTTAACTATTTTTCTGGTGATGTCACTGTTGAAAGAGACAAAGAATTGTCTATTGATGATGAATATTTGGTTGCAAATTTATCACCTGAAACACTATCTGATAAAGCCAACCAAATTTTGGAAGACAAAACAGAGTCTGATTATTTAAGTGATAATGAGAATGCCGTGCAAGCAAAAAAGCAGGAAACACAGAAAGATTTAACCAAAGATAGTTCACCTTTTGCTCCCAAGGCATTATTGAAAAAGTCTTCTCGATTCTTTTCTGCATCATTCTTTTCTTTTACCGAAGATGGGACTGAGTTCACACCAGCATCAGTCTTTCAGGGCCTTATAATATCTGTACAGAAGCAGTTGCCAAAGCTGATTTTTGGGTTCTTGTTAATGGGAGCAGGGGTTACCTTCTTTGCTAATAAAGTGGATAGGAATGCTCAGCTGCTTCCCCAGGCAGACGTTATCATGACTAGTGTTGAAGAAGTTTCCTCTAGTGCAAAGCCGCTGGTTAGACACCTACAGAAACTGCCCAAGAAAATCAAGAAAATCATTGCGTCATTACCTCATCAAGAGGTGAATGAGGAAGAAGCCTCCCTCTTTGACATGCTCTGGCTATTACTTGCAAGTGTTATATTTGTGCCAATATTCCAGAAAATCCCTGGAGGCAGTCCTGTTCTTGGCTATTTGGCTGCTGGTATCTTGATTGGGCCATATGGTCTCTCTATCATTCGTCACGTACATGGCACAAAAGCAGTAGCTGAATTTGGAGTTGTTTTCCTTCTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCGCAGGTCTTGGCAACTGCTGTAGCTATTGGTTTGGTGGTTCATTTTATTTGTGGCCAACCTGGTCCTGCTGCTATTGTTGTTGGGAATGGCCTTGCATTATCATCCACTGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGTACATCACGGCATGGCCGAGCTACTTTTTCTGTGTTACTCTTTCAGGATCTGGCTGTTGTGGTGTTGCTAATTCTCATACCTCTTATTTCTCCCAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCTATTGCTGAAGCACTTGGAATGGCTGCTGTTAAGGCAGCAGTTGCAATCACTGCCATAATTGCAGGGGGACGATTGCTCCTTCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCTGAAATTTTCTCAGCCAATACACTCCTTGTTATTCTTGGCACAAGTCTTCTTACGGCCAGGGCCTGTGAAGGTTTGATTGTTTGGTCCAGCCATTGCCTGGAAATCGACTGGCCAGTTGGGTTGGTTCTATCAGTAGCCGTTCATGGTGTGGGGTTGGGACTTTCCATGGCATTAGGAGCCTTTTTGGCTGGTTTACTGCTGGCAGAAACTGAATTTTCATTACAGGTTGAATCTGACATTGCTCCATATCGTGGCCTTCTTTTAGGGCTATTCTTTATGACGGTTGGAATGTCAATAGATCCAAAACTTCTTGTATCAAACTTCCCAATCATCGGAGTTACACTAGGACTCTTAATATGTGGCAAGACTATCTTGGTTTCTTTGATGGGTAGAATGTTTGGGATTTCCTTCATTTCTGCCATCAGAGCTGGTCTTCTTCTTGCTCCTGGGGGAGAGTTTGCATTTGTGGCTTTTGGTGATGCCGTTAATCAGGTTTTTTGTCCTTAA 3597 0.4145 MQYRKREKGEEEDNDVIKNNNAIKRRGEAREKGEDEDAISETECREEKLNRLTFDFLSGIFTTVNKIIIIIIIIIIITCVRNLCNKRVNVQVFLGLVSDFFFKGTRSKCCSPAEKENLSNLEDYACLPSIPFSSFSVFCDQSSRTVLLTSKQPLSFDGQPNECFASDYYENRVGFGSFSIFLLRMILAHVLVCVDTECGNLVVLIELIVLGECGVCVVLVVSDFVEEYEHGYGLWFAAVKGVRRYWDELQTQIRRGFGCAGFDRSVSKFRVSGVSASACWSNSRVFTGREFKVLNIKRSLSCKNNNLFTGSRVIWSKCQGNDSLAYVTGNGRTVDYVEGSDEDAGLGPVSSVELDAPLEEEEQAGRKEGGSEIGSEELSVDELKELLQKARKELEVAQINSTMFEEKVKKISETAISLHDEAVISWNAVNSTLDTIKEVANEELMAKEAVQTATMALSLAEAKLQVAIESLEPTKEVPDSTQGSNESNADKDMEEHEKAILFAEADIKECQANLANCEAELRRLQNRKEELQKEVSKLQEIAENAQLNAVKAEEDVTNIMLLAEQAVAFELEATKRVNDAEIALQRADKSNSNSNTDTIETTQAPDVEAILEEEKVVNYFSGDVTVERDKELSIDDEYLVANLSPETLSDKANQILEDKTESDYLSDNENAVQAKKQETQKDLTKDSSPFAPKALLKKSSRFFSASFFSFTEDGTEFTPASVFQGLIISVQKQLPKLIFGFLLMGAGVTFFANKVDRNAQLLPQADVIMTSVEEVSSSAKPLVRHLQKLPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAVAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAVAIGLVVHFICGQPGPAAIVVGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGMAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARACEGLIVWSSHCLEIDWPVGLVLSVAVHGVGLGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPIIGVTLGLLICGKTILVSLMGRMFGISFISAIRAGLLLAPGGEFAFVAFGDAVNQVFCP 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00466 1198 MobiDBLite consensus disorder prediction 660 686 - -
Vimu6g00466 1198 Coils Coil 493 555 - -
Vimu6g00466 1198 MobiDBLite consensus disorder prediction 359 375 - -
Vimu6g00466 1198 Pfam Sodium/hydrogen exchanger family 818 1048 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu6g00466 1198 Pfam Sodium/hydrogen exchanger family 1070 1188 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu6g00466 1198 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 415 1051 - -
Vimu6g00466 1198 MobiDBLite consensus disorder prediction 1 39 - -
Vimu6g00466 1198 MobiDBLite consensus disorder prediction 356 375 - -
Vimu6g00466 1198 Gene3D - 1058 1196 IPR038770 -
Vimu6g00466 1198 Gene3D - 808 1057 IPR038770 -
Vimu6g00466 1198 MobiDBLite consensus disorder prediction 471 493 - -
Vimu6g00466 1198 Coils Coil 373 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00466 Vimu-Chr6 5430236 5441331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00466 241 1194 Inorganic Solute Cotransporters AT4G00630 59.775 0.0 988
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00466 K03455 - gmx:100798822 1426.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00466 6 5430236 5441331 Vimu6g00466 6 5430236 5441331 ECH
Vimu6g00466 6 5430236 5441331 Vimu9g00354 9 4237719 4247511 PCT