Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00465 ATGCAGGGCATAATGTCTTCCCAGCTATCATCTTTGCTTTTTCTTGTTGTGGGCATTTCAATGGCCATCACACCATGGCTAGCAGCAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCAGAATGATGTTAGAAGACTATTACCTGAAGAAAGTGAGACAGATGATCTGCAAGATCATATTATTATTTGTGGATTTGGACGAGTGGGCCAGATCATTGCCCAACTTCTTTCTGAGCGTCTTATTCCGTTCGTCGCACTAGATGTAAGGAGTGATAGAGTTGCAGTTGGCCGTGGTCTCGGTCTGCCTGTGTATTTTGGGGATGCTGGTAGTAGAGAGGTCTTACATAAACTTGGAGCTGAAAGGGCATGTGCTGCAGCAATAACACTCGATACACCTGGTGCAAATTATAGAACAGTCTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAGACCTTTGTCCGTGCCCATGACGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCCACTGCTGTCGTACCAGAGACTTTGGAACCAAGTCTTCAACTAGCAGCTGCTCTGCTTTCTCAGGCCAAACTCCCCACGTCGGAGATTGCAGCAACTATAAATGAATTCAGAACTCGACATCTGGCTGAGCTCTCGGAGCTGTGCGAAGCAAGTGGAAATTCTCTAGGTTATGGATATAATAATAATAATAAAATTGCGGGCAAACCAAAATCCCAATCAACAGATTCATTAGATGAGACCCCTGTTTCTGAAGGCACACTGGCAATATGA 777 0.453 MQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQNDVRRLLPEESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRGLGLPVYFGDAGSREVLHKLGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAALLSQAKLPTSEIAATINEFRTRHLAELSELCEASGNSLGYGYNNNNKIAGKPKSQSTDSLDETPVSEGTLAI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00465 258 ProSiteProfiles RCK N-terminal domain profile. 59 181 IPR003148 GO:0006813
Vimu6g00465 258 MobiDBLite consensus disorder prediction 235 258 - -
Vimu6g00465 258 FunFam K(+) efflux antiporter 2 chloroplastic 55 219 - -
Vimu6g00465 258 MobiDBLite consensus disorder prediction 235 250 - -
Vimu6g00465 258 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 2 232 - -
Vimu6g00465 258 Pfam TrkA-N domain 60 173 IPR003148 GO:0006813
Vimu6g00465 258 Gene3D - 55 219 - -
Vimu6g00465 258 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 56 197 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00465 Vimu-Chr6 5418414 5424957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00465 2 254 Inorganic Solute Cotransporters AT1G01790 81.423 1.56e-131 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00465 K03455 - gmx:100818163 436.802