Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00444 ATGGCCGAAGACAAAAAGGGATTGGCAATAGGAATCGACCTTGGCACAACATACTCCTGTGTTGCAGTATGGCAGCAACAACATAATAGAGTGCAGATCATTCATAATGATCAAGGCAACAGTACCACTCCTTCTTGTGTTGCTTTCACGGACCATGAAAGGTTGACAGGAGATGCTGCTAAAAATCAGGCTGCTTCCAATCCAGAGAACACCATCTTCGATGCGAAGAGGTTGATAGGTAGGAAATACAGTGACCCACTTGTTCAGAAAGACAAAATGTTGTGGCCATTTAAGGTTGTTGCTGGTGTCAATGATAAACCCATGATTTCTGTTAAGTACAAAGGTCAGGAGAAGAGCCTTTGTGCGGAGGAAATATCATCCATGGTTCTCTCAAAGATGCGGGACATTGCAGAGGCATACTTGGAAAAGCCTGTGAAGAATGCGGTGGTTACTGTTCCTGCCTATTTCAATGATTCTCAGCGCAAAGCTACCATGGATGCTGGTGCTATTATAGGTCTCAATGTTATTCGTATAATCAATGAACCCACCGCTGCAGCAATTGCATACGGTCTTGATAAGAGAAATGATTGTGTTGGAGAACGAAATATTCTTGTTTTTGACTTTGGAGGTGGGACATTCGATTTGTCTATTCTCACTATTGAGAACAAAGTTTTTCAAGTTAAGGCCACTGCCGGAAACACTCACCTTGGCGGAGAGGACATTGATAATAGAATGATGAACTACTTTGTGGAGGAGATGAAAAGGAAACGTAAAGTTGACATAAGTGGGAATCCACGTGCCTTAAGGAGGTTGAAAAGTGCTTGCGAGAGAGCAAAAAGGGCACTGTCATCTGCGGTTACTACAAGCATCGAGATAGATGGTTTATTTGAAGGCATTGATTTGCTTTCTTCAATAACCCGAGCAAAATTTGAAGAAATCAATATGGAGGTCTTTGAAGAGTGTATGGAAACAGTAGATAGGTGTCTTAGGGTTGCTAAGATGGAGAAAAGTAGTGTGCATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCCAAAATGCAGCAGCTACTTCAAGACTTTTTCAACGGGAAGGATCTTCGCAAGAGCGTAAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTGCAGGCTGCTCTCTTGACTGAAGGCATTAAGAATGTTCCAGATTTGGTATTGAAAGATGTTACTCCGCTTTCACTTGGCGTATCGGTACAGGGGGATCTCATGAGTGTTGTGATTCCTAGGAACACTACTATTCCTATAAAGAAGAAACAAGTTTTTCGGACAACCATAGATGACCAATTCCCAGTCATGATTGAGGTTTATGAGGGCGAGAGAGTGAAAGCCAGTAATAATAACTTGTTGGGTTCTTTTTCTATTTCTGGCTTTCCCCCAGCTCCTCGTGGCTATCCTTTTGATGTGACTTTTACAATAAATGAAAATGGCATTCTTTCAGTTTCTGCTGAGGAAAAAGTAACCGGCAACAGGAATGAAATTATAATATCCAATGACAAAGGAAGACTATCAAATGCAGAAATTAGTATAATGATTAAGGAAGCAGAAAATTATAAGTCTGAAGATGATAAGTTTCTTAAGAAGGCCAATGCAATGAATGATTTAGATGATCATATTTATAAGATCGGAAAGGCTTTAAAGAGAGAGGATATCAGCTCAAAGTTGAGCTCGAAAGAAAAGGAAGATATCATGTCTAAAATTTCTAGAGCCACTGATATGCTTGATAGTCGGAAGCAGATGGAAGATATAGTTGTTATTGAAGACTTTCTGAAAGATCTTAAAGCAATCAGTGAACGAATTATGGTCGTTGAAAAGTCTTGCCTTCGTTTTGCCTCATCGTTGGGGTCTTGGCGTTCTTGTGTTCATCTAGCCATGGATGGTGCAATGGATGCTTCCACTGACAAAGGTGGTTCGACGAGGAAGGGTTTTGAACTTTGTGTACTTTGGTTTGTGATTGTTGTAGTTGATGGTTCGGCACCTTCAGCAAAGAAAATATTGAAACAAAAACTGAAAGACAGTGTTATGCGTAGCATGGAGCATAAGCAAAATCTAGTTGCAGAGCTTAAAAGGGAGGTCCTTCACTTGGAGCAGGAGGTTGCTTATGAGAAAGCTAGACGAAGAGGAACAAAGGAAGGTGGACAGAGTGTGCCCCGTGAAGATCCTTCGTTGTCCCCGAGAGGCTTTTCCCCGGGAGGCATGTCCCCAGGAGAGATGTCCACTGATCCAACTCCAATGAAGACTGATGTAGGTCCAATGAAGACTGATCCATCTCCAATGAAGATTATTGCCAGGATGGGTTCACGAAGGCGGTTCAAGAGCATAGCTCTTAGAACTCCTTTTACTGGAACTCTAAGAATAAAACATGTTTGA 2409 0.418 MAEDKKGLAIGIDLGTTYSCVAVWQQQHNRVQIIHNDQGNSTTPSCVAFTDHERLTGDAAKNQAASNPENTIFDAKRLIGRKYSDPLVQKDKMLWPFKVVAGVNDKPMISVKYKGQEKSLCAEEISSMVLSKMRDIAEAYLEKPVKNAVVTVPAYFNDSQRKATMDAGAIIGLNVIRIINEPTAAAIAYGLDKRNDCVGERNILVFDFGGGTFDLSILTIENKVFQVKATAGNTHLGGEDIDNRMMNYFVEEMKRKRKVDISGNPRALRRLKSACERAKRALSSAVTTSIEIDGLFEGIDLLSSITRAKFEEINMEVFEECMETVDRCLRVAKMEKSSVHDVVLVGGSSRIPKMQQLLQDFFNGKDLRKSVNPDEAVAYGAAVQAALLTEGIKNVPDLVLKDVTPLSLGVSVQGDLMSVVIPRNTTIPIKKKQVFRTTIDDQFPVMIEVYEGERVKASNNNLLGSFSISGFPPAPRGYPFDVTFTINENGILSVSAEEKVTGNRNEIIISNDKGRLSNAEISIMIKEAENYKSEDDKFLKKANAMNDLDDHIYKIGKALKREDISSKLSSKEKEDIMSKISRATDMLDSRKQMEDIVVIEDFLKDLKAISERIMVVEKSCLRFASSLGSWRSCVHLAMDGAMDASTDKGGSTRKGFELCVLWFVIVVVDGSAPSAKKILKQKLKDSVMRSMEHKQNLVAELKREVLHLEQEVAYEKARRRGTKEGGQSVPREDPSLSPRGFSPGGMSPGEMSTDPTPMKTDVGPMKTDPSPMKIIARMGSRRRFKSIALRTPFTGTLRIKHV 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00444 802 FunFam Heat shock 70 kDa protein 73 128 - -
Vimu6g00444 802 PANTHER HEAT SHOCK PROTEIN 70KDA 9 577 IPR013126 GO:0005524|GO:0140662
Vimu6g00444 802 Gene3D - 194 368 - -
Vimu6g00444 802 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vimu6g00444 802 FunFam Heat shock 70 kDa protein 392 545 - -
Vimu6g00444 802 Coils Coil 684 718 - -
Vimu6g00444 802 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vimu6g00444 802 Gene3D - 546 616 IPR029048 -
Vimu6g00444 802 Gene3D - 73 128 - -
Vimu6g00444 802 Gene3D - 10 386 - -
Vimu6g00444 802 Gene3D Actin; Chain A, domain 4 237 320 - -
Vimu6g00444 802 PRINTS 70kDa heat shock protein signature 38 50 - -
Vimu6g00444 802 PRINTS 70kDa heat shock protein signature 339 355 - -
Vimu6g00444 802 PRINTS 70kDa heat shock protein signature 148 168 - -
Vimu6g00444 802 PRINTS 70kDa heat shock protein signature 371 391 - -
Vimu6g00444 802 PRINTS 70kDa heat shock protein signature 8 21 - -
Vimu6g00444 802 PRINTS 70kDa heat shock protein signature 60 68 - -
Vimu6g00444 802 PRINTS 70kDa heat shock protein signature 211 221 - -
Vimu6g00444 802 PRINTS 70kDa heat shock protein signature 477 493 - -
Vimu6g00444 802 PRINTS 70kDa heat shock protein signature 397 416 - -
Vimu6g00444 802 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vimu6g00444 802 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 545 IPR029047 -
Vimu6g00444 802 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 615 IPR029048 -
Vimu6g00444 802 MobiDBLite consensus disorder prediction 716 772 - -
Vimu6g00444 802 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Vimu6g00444 802 Pfam Hsp70 protein 9 614 IPR013126 GO:0005524|GO:0140662
Vimu6g00444 802 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vimu6g00444 802 FunFam Heat shock protein 70 10 201 - -
Vimu6g00444 802 FunFam Heat shock 70 kDa 237 320 - -
Vimu6g00444 802 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 549 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00444 Vimu-Chr6 5211891 5215758 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00444 1 614 Calmodulin-binding Proteins AT3G12580 65.584 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00444 K03283 - gmx:102667578 935.25