Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00434 ATGGCCGGAAAAGGAGATGGACCTGCCATCGGAATCGATCTTGGCACCACCTACTCCTGTGTTGGAGTGTGGCAGCATGACCGTGTAGAAATCATCGCCAATGACCAGGGTAACACCGTTTTCGTTGTGGCCATTCAAATTTGGGTGGTGGTATTTTTGATGTCTCTTCTTACTATTGAGGAGGGCATTTTTGAAGTTAAGGCCACTGCTGAGATACTCATCTCGGAGGAGTTTAAGAGGAAACACAAGAAGGATATTAGTGGGAACCCAAGGGCGCTTAGGCGATTTAGGACTGCCTGTGAGAGGGCGAAGAGGACTCTCTCGTCTACTGCACAGACCACAATTGAGATTGATTCTCTTTACGAAGGTGTTGACTTCTACACAACTATCACCCGTGCTAGGTTTGAGGAGCTTAACATGGATCTGTTCAGAAAGTGTATGGAACCTGTTGAAAAGTGTCTGAGGGATGCGAAGATGGACAAGAGCTCCGTCCACGATGTTGTCCTAGTTGGTGGATCCACTAGAATTCCCAAAGTGCAGCAGCTGTTGCAAGATTTCTTTAATGGCAAGGAACTTTGCAAGAGTATCAATCCAGACGAGGCCGTTGCCTATGGAGCTGCTGTTCAGGCAGCAATATTGAGCGGTGAGGGTAATGAGAAAGTGCAGGACCTGTTGCTGTTGGACGTTACACCCCTTTCTCTTGGTTTGGAAACTGCCGGTGGTGTCATGACTGTTCTCATTCCAAGGAACACCACCATTCCAACCAAGAAGGAGCAAGTGTTCTCTACTTACTCCGACAACCAACCCGGTGTCTTGATTCAGGTATTCGAGGGAGAGAGAGCCAGAACCAGGGACAACAACTTGTTGGGTAAATTTGAGCTTTCTGGCATTCCCCCAGCACCCAGAGGTGTTCCTCAGATCACCGTTTGCTTTGACATAGATGCCAACGGTATCTTGAATGTCTCAGCAGAGGACAAGACCACCGGGCAGAAAAACAAGATTACTATTACAAACGACAAGGGTAGACTCTCAAAGGAGGATATTGAGAAGATGGTCCAGGAGGCAGAGAAGTACAAGGCAGAGGATGAGGAGCACAAGAAGAAGGTCGATGCAAAGAATGCACTGGAAAATTATGCCTACAACATGAGGAACACTATTAAGGATGAGAAAATTGCTTCCAAGCTTTCTGCCGATGATAAAAAGAAGATTGAAGATGCTATTGAGAGTGCTATTCATTGGTTGGACAGCAACCAACTTGCCGAAGCAGATGAGTTCGAAGACAAGATGAAAGAGCTGGAGAGCATTTGCAACCCAATCATTGCGAAGATGTACCAGGGTGCCGGTGCTCCCGACATACCTGGAGGCATGGATGAAGATGTTCCTGCTTCTGCATCTGGTGGTGCTGGTCCTAAGATCGAAGAAGTTGATTAA 1431 0.4717 MAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNTVFVVAIQIWVVVFLMSLLTIEEGIFEVKATAEILISEEFKRKHKKDISGNPRALRRFRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIASKLSADDKKKIEDAIESAIHWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGAPDIPGGMDEDVPASASGGAGPKIEEVD 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00434 476 FunFam Heat shock 70 kDa protein 71 145 - -
Vimu6g00434 476 Gene3D - 194 211 - -
Vimu6g00434 476 Gene3D - 146 193 - -
Vimu6g00434 476 Gene3D Actin; Chain A, domain 4 73 145 - -
Vimu6g00434 476 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vimu6g00434 476 PANTHER HEAT SHOCK PROTEIN 70KDA 53 409 IPR013126 GO:0005524|GO:0140662
Vimu6g00434 476 FunFam Heat shock cognate 70 kDa protein 2 146 189 - -
Vimu6g00434 476 Gene3D - 366 476 IPR029048 -
Vimu6g00434 476 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 370 451 IPR029048 -
Vimu6g00434 476 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 219 376 IPR029047 -
Vimu6g00434 476 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 216 358 IPR029047 -
Vimu6g00434 476 ProSitePatterns Heat shock hsp70 proteins family signature 3. 167 181 IPR018181 -
Vimu6g00434 476 FunFam Heat shock 70 kDa protein 366 476 - -
Vimu6g00434 476 SUPERFAMILY Actin-like ATPase domain 55 215 IPR043129 -
Vimu6g00434 476 MobiDBLite consensus disorder prediction 447 476 - -
Vimu6g00434 476 FunFam heat shock 70 kDa protein-like 3 47 - -
Vimu6g00434 476 Pfam Hsp70 protein 52 445 IPR013126 GO:0005524|GO:0140662
Vimu6g00434 476 Pfam Hsp70 protein 9 39 IPR013126 GO:0005524|GO:0140662
Vimu6g00434 476 FunFam Heat shock 70 kDa 218 372 - -
Vimu6g00434 476 FunFam heat shock 70 kDa protein-like 190 215 - -
Vimu6g00434 476 Coils Coil 348 368 - -
Vimu6g00434 476 SUPERFAMILY Actin-like ATPase domain 8 40 IPR043129 -
Vimu6g00434 476 Gene3D - 2 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00434 Vimu-Chr6 5131832 5133937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00434 52 476 Calmodulin-binding Proteins AT3G12580 89.116 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00434 K03283 - gmx:100789474 775.393