Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00416 ATGGCATACCCCGCAGTATCAATGACAATCGACAATGTATCAATGGGAGTTGGTGGTAATTTCTGGGAGCTGCTAAAGCCCTATGCGCGTCGCGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCCGTGGACCTATCATTCTGGATTGTTCAGCATGAGAATGCTCTGAAGGCCACTCATGTCAGAAAACCTCACCTCAGACTTACCTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGGGCACTTCCTGTGTTCATTGTTGACGGGACTCCATCACCATTGAAAGCACAGGCCAGGATTGCAAGATATTTTGGGTCTTGTGGCATTGAGCTGGCTAACTTGCCAGTCTCTGAAGGTGTTTCAGCAGAAAGGAGCAGCCTGTTTTCAAGCCGAGTTCAAGAATGTGTGGAACTGGTCAAACTACTTGGAATGCCTGTACTACAGGCTAAAGGAGAGGCCGAAGCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGGGCAAAATGCATTATAAAATGTTTCTGTCCCAATTCCAAAGAACCATTTGAATGCTACAACATGTCAGATATTGAAGCTGGACTTGGATTGAAGAGGAAACACTTGATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGAATTGGGCTTGATAATGCACTTCATTTTGCTAAAGCTTTTAATGAAGATGATATATTGAATAGATTACAGGAGATAGGCAAAGGGGATACTTCACAAATTCCCAGCTGCACTAAATTTGAGGACAACATAGATGTTGATGGAAACTGCCCGAATACAAAACAACCTCATTGCTCATTATGTGGGCATCCTGGCAGCAAGAAAGATCATATGAAATTTTCTTGTGAATCCTGTGTCACAAAGGATGATGAAGGCTGCCAGAGAAAACCAGAGGGTTTTAAATGTGATTGCTGCTCGTGTGTTTTGAATAGGAGACACAAGGAGCAGAAACGAGAGGAAAAGCGGTACTCAAAAATTTGTCACAAAATTGCAGAGGAGCCAAACTTTCCCAAAGATGAAATCATTGACATGTACTTATGCAATGACAATGGTTACTTTTCAGCAAGTGATGGTCCTCGGATCATATGGGGAAAACCCAATATTGAGGTGCTGATTGATTTTTTAAACTTTCATCAGCGTTGGGAACCATCCTACATTCGACGGACTATGTTTCCTATGATGTCTACTATCTTTTTGAGAGATATGTCTACACCTACGGGAGAAACTTTGTTATTTGGGCAGTATGAGTTTGATTCGGTTGAACGTGTGAAGATGAGATATGGATATCAGTTTTATGTGGTCAAGTGGAAACGTGCAGGGGTAAACATTAACACCAGCAAAGTTCCATCAAATGAATCAAGTGTGCAACAAGATGTAGTAGAGCTTGATGAAATGGTGGATCTACTGGACGACGCCCCTGAGATTCATGTAGATGGATGTAGTTTTCTGTTTACAGATGAAAACATGGACCTAGTAGGGACTGCTTTTCCAGCTGAAGTCAAAAGTTTTTTGCAGGAGCAGGAAAGGAAAAGGAGAAAGAACTCAAAATCAAGGTGCCAAGAAAATGAAAAACCAGCTTCTCCAAACTCAAGAAGTACTCAGCTAAGCATCACAGAGTTCTTTCCATCAACCAAAATTAAACATCGTCAATCAAAACAAAGAGAAGAATCATCCAATGATGCTGATAGTGAGGGCAGCAAGAGTTCAAAAATGAAAAGAAACATGTCTAATTCTGACAAGCTTCCAAAATCTGTGAGGCGTCGCCTTTTGTTTGACTAG 1860 0.4161 MAYPAVSMTIDNVSMGVGGNFWELLKPYARREGFDFLRNKRVAVDLSFWIVQHENALKATHVRKPHLRLTFFRTINLFSKFGALPVFIVDGTPSPLKAQARIARYFGSCGIELANLPVSEGVSAERSSLFSSRVQECVELVKLLGMPVLQAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGLDNALHFAKAFNEDDILNRLQEIGKGDTSQIPSCTKFEDNIDVDGNCPNTKQPHCSLCGHPGSKKDHMKFSCESCVTKDDEGCQRKPEGFKCDCCSCVLNRRHKEQKREEKRYSKICHKIAEEPNFPKDEIIDMYLCNDNGYFSASDGPRIIWGKPNIEVLIDFLNFHQRWEPSYIRRTMFPMMSTIFLRDMSTPTGETLLFGQYEFDSVERVKMRYGYQFYVVKWKRAGVNINTSKVPSNESSVQQDVVELDEMVDLLDDAPEIHVDGCSFLFTDENMDLVGTAFPAEVKSFLQEQERKRRKNSKSRCQENEKPASPNSRSTQLSITEFFPSTKIKHRQSKQREESSNDADSEGSKSSKMKRNMSNSDKLPKSVRRRLLFD 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00416 619 SUPERFAMILY PIN domain-like 20 227 IPR029060 -
Vimu6g00416 619 Gene3D - 19 211 - -
Vimu6g00416 619 FunFam Flap endonuclease GEN-like 1 212 271 - -
Vimu6g00416 619 Pfam XPG I-region 145 227 IPR006086 GO:0004518
Vimu6g00416 619 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 141 158 IPR006084 -
Vimu6g00416 619 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 162 182 IPR006084 -
Vimu6g00416 619 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 85 104 IPR006084 -
Vimu6g00416 619 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 217 232 IPR006084 -
Vimu6g00416 619 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 39 53 IPR006084 -
Vimu6g00416 619 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 15 582 IPR006084 -
Vimu6g00416 619 FunFam Flap endonuclease GEN-like 1 16 211 - -
Vimu6g00416 619 MobiDBLite consensus disorder prediction 572 619 - -
Vimu6g00416 619 Pfam XPG N-terminal domain 15 101 IPR006085 GO:0004518
Vimu6g00416 619 MobiDBLite consensus disorder prediction 532 547 - -
Vimu6g00416 619 Gene3D - 212 274 - -
Vimu6g00416 619 CDD PIN_GEN1 16 216 - -
Vimu6g00416 619 SMART xpgn3 15 111 IPR006085 GO:0004518
Vimu6g00416 619 SMART xpgineu 142 212 IPR006086 GO:0004518
Vimu6g00416 619 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 212 428 IPR036279 -
Vimu6g00416 619 MobiDBLite consensus disorder prediction 548 571 - -
Vimu6g00416 619 MobiDBLite consensus disorder prediction 532 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00416 Vimu-Chr6 4947442 4954125 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00416 15 327 Core DNA Replication Machinery Family AT5G26680 25.862 3.01e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00416 K15338 - gmx:100779848 990.719