Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00413 ATGTTGGGTTCAGGTACCAATTTGGTGACCACGGTCATTGGGTTTGGCATGAGTGCCACTTTCATTGTGTTTGTCTGCACCAGAATCATATGTGGAAGGCTAAGAGGAGTTGTTGAATCTCGGATGGTGTATGAGATTGAATCAAGAATTGATATAGAACAGCCAGAACATCATGTTAATGACCCTGAATCAGAACCTGTTCTGCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACACAATTATCAAGCTCATGCAAGGAGGAGATTGATATATATAACTTTGTTTGCTCCTGCAGGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTCTTGCGTATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACCTGCCCAGTATGCCGTCTGCCATTGAAGAACTCTTCTGAAACAAAACATGTAAGACCTGTCACGTTTACCATGAGCCAATCCCTTGACGAGTCTCACACATCAGAAAGAAGTGAAAATGCAGAGAGACATGATGAACCTACTCCTACTGCAGCCAGTAACTCTTTACAACCAACTTCAGGTGAAGAAGGAGCAAGATAA 636 0.4182 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGVVESRMVYEIESRIDIEQPEHHVNDPESEPVLLDAIPTLKFNQEAFSSLEHTQLSSSCKEEIDIYNFVCSCRCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQSLDESHTSERSENAERHDEPTPTAASNSLQPTSGEEGAR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00413 211 Pfam Ring finger domain 108 151 IPR001841 -
Vimu6g00413 211 SUPERFAMILY RING/U-box 108 157 - -
Vimu6g00413 211 CDD RING-H2_EL5-like 108 151 - -
Vimu6g00413 211 MobiDBLite consensus disorder prediction 192 211 - -
Vimu6g00413 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 161 IPR013083 -
Vimu6g00413 211 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vimu6g00413 211 SMART ring_2 109 150 IPR001841 -
Vimu6g00413 211 MobiDBLite consensus disorder prediction 177 191 - -
Vimu6g00413 211 MobiDBLite consensus disorder prediction 165 211 - -
Vimu6g00413 211 PANTHER OS11G0150450 PROTEIN 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00413 Vimu-Chr6 4928639 4930299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00413 108 211 C3H Transcription Factor Family AT4G10150 39.252 6.96e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00413 - - gmx:100780922 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00413 6 4928639 4930299 Vimu6g00413 6 4928639 4930299 ECH