Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00409 ATGGTAATTAAGGCTTGGTTTTCTTGTGTTCCGTTTGTGGCAGCTAATCATCGGTTCTGCGCCTACCAAACCGAAATCATGGTGGAAGATGGTGATGAGATTGCAGTTGATGCACGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCCGTTGTTCTTGATAAAGCAAGAGAGGCTAAGGGATTTGCCGGTAGATGGAAGATGATCATTGCAAAATTGGAACAGATCCCGTCACGATTATCCGATTTGTCAAGCCATCCGTGCTTCTCAAAAAATGCTTTATGCAAGGAGCAGTTGCAGGCTGTGTCAAAGACGCTTGGGGAAGCGATTGAATTAGCCGAGTTGTGTATGAAGGAGAAGTACGAGGGTAAGCTTCGGATGCAGAGTGATCTAGATGCATTGACTGGGAAGCTTGATTTGAATTTGAGGGATTGTGGGCTTTTGATCAAAACTGGTGTGCTGGGTGAGGCTACTTTACCATTGGCCATGTCAAGTTCTGTGGCAGAATCAGATGTTGCAATACACAACAACATAAGGGAATTGCTGGCGCGTCTTCAGATCGGGCACTTGGAAGCAAAGCACCAAGCTCTAGACAGCGTTGTTGAGGCCATGAAGGAAGATGAGAAGAATGTTTTAGCGGCTCTTGGTCGGAGCAACATTGCTGCTTTGGTTCAATTGCTTACAGCTACCTCTCCCAGGATAAGAGAGAAAACAGTTACTGTTATATGCTCGCTTGCAGAGTCTGGTAGTTGCGAGAATTGGCTAGTTTCTGAGGGAGTTCTGCCACCTCTTATAAGGCTTGTAGAATCTGGCAGTGCAGTGGGGAAGGAGAAAGCCACGATATCTCTTCAGAGGTTGTCTATGTCAGCCGAAACAGCTCGCGCAATCGTGGGGCATGGTGGGGTTCCTCCATTGGTTGAACTTTGTCAAATTGGGGATTCTGTGTCACAGGCTTCGGCTGCTTGTACTCTGAAGAACATATCAGCTGTGCCTGAGGTGAGACAAACTTTGTCTGAAGAAGGGATTGTGAGGACCATGATCAATCTTCTTAACTGTGGTATTCTGTTAGGTTCAAAAGAGCATGCTGCAGAATGTTTGCAGAATCTCACTGCAAGCAACGAGAATCTAAGGAAGAGTGTCATATCAGAAGGTGGTGTTAGGAGTCTTCTGGCTTATCTTGACGGTCCACTTCCTCAAGAATCCGCTGTTGGAGCATTGAGGAATTTGGTCGGATCGGTCCCTGAGACATCCTTGGTCTCTCTCGGTTTGGTCCCCCGATTGGTTCACGTGTTAAAGTCGGGATCTTTAGGTGCTCAGCAAGCAGCCGTAGCCGCCATATGCAGAGTTTGCAGCTCGACAGACATGAAGAAAATGGTTGGTGAAGCTGGATGCATCCCTCTCCTTGTGAAAATGCTAGAGGCTAAGTCAAACAGTGCTAGAGAGGTTGCTGCTCAAGCAATTGCAAGCCTAATTGTTGTGTCTCAGAACAGGAGAGAAGTGAAAAAGGATGATAAAAGTGTGCCAAATTTGGTTCAGTTGCTTGATCCAAGTCCTATGAACACTGCAAAAAAATATGCAGTGACATGCCTGGGATCACTTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCGTATGGGGCTATTGGGTATCTCAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTGCATGAACGGTTGGAAAGAGGGAAATTGAAAAGTTTTTTTAGCAAGAAATAG 1758 0.4573 MVIKAWFSCVPFVAANHRFCAYQTEIMVEDGDEIAVDARSTEDWLLHAQELVPVVLDKAREAKGFAGRWKMIIAKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSKTLGEAIELAELCMKEKYEGKLRMQSDLDALTGKLDLNLRDCGLLIKTGVLGEATLPLAMSSSVAESDVAIHNNIRELLARLQIGHLEAKHQALDSVVEAMKEDEKNVLAALGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSAVGKEKATISLQRLSMSAETARAIVGHGGVPPLVELCQIGDSVSQASAACTLKNISAVPEVRQTLSEEGIVRTMINLLNCGILLGSKEHAAECLQNLTASNENLRKSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVPETSLVSLGLVPRLVHVLKSGSLGAQQAAVAAICRVCSSTDMKKMVGEAGCIPLLVKMLEAKSNSAREVAAQAIASLIVVSQNRREVKKDDKSVPNLVQLLDPSPMNTAKKYAVTCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLKSFFSKK 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00409 585 Gene3D - 418 565 IPR011989 -
Vimu6g00409 585 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 39 583 - -
Vimu6g00409 585 Gene3D - 172 359 IPR011989 -
Vimu6g00409 585 Gene3D - 360 417 IPR011989 -
Vimu6g00409 585 SMART arm_5 375 414 IPR000225 GO:0005515
Vimu6g00409 585 SMART arm_5 496 538 IPR000225 GO:0005515
Vimu6g00409 585 SMART arm_5 455 495 IPR000225 GO:0005515
Vimu6g00409 585 SMART arm_5 210 250 IPR000225 GO:0005515
Vimu6g00409 585 SMART arm_5 333 374 IPR000225 GO:0005515
Vimu6g00409 585 SMART arm_5 292 332 IPR000225 GO:0005515
Vimu6g00409 585 SMART arm_5 415 454 IPR000225 GO:0005515
Vimu6g00409 585 Pfam Armadillo/beta-catenin-like repeat 296 332 IPR000225 GO:0005515
Vimu6g00409 585 Pfam Armadillo/beta-catenin-like repeat 456 493 IPR000225 GO:0005515
Vimu6g00409 585 SUPERFAMILY ARM repeat 181 562 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00409 Vimu-Chr6 4888790 4892610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00409 425 568 U-box Gene Family AT3G54790 29.167 2.73e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00409 - - gmx:100781453 997.653