Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00343 ATGATGGATAACATTGGAAGTAATATGAGTGAAGTTGTGGAGTGTAGGGAAAGTACTGATGATTTTGGTTTAATTGAAGCGCCTGACTGTTATGTTACTTTGGATGACCCTAATAAAAGTCCTATGGACGTGGACCCAACAGAAGCCAAAAAATTCTACAGGAACTATGCTATTAGATGTGGTTTTGCTGTGCGCACAAGAACATCAAAAAAGGATGACAACAATAATGTGAACTACCTCAGATTAGTGTGCTCTAGGGAAGGTAAATATGTTTCCTCAATCAACCCCGAAGTTAAAAAACTTCCCAGCCAGACCAAACAATGTCCAGTTGGAATAACAATTTCAAAGAAGGACGACAAATGGTTTATAAGGACTGTGAACTTAGACCACAGCCATGACCTATGTCCAACTACTTCAAAGTTAATCCCGGGAAATAGGAAATTGAGCATGCAGAGCAAACACACTTTGGAGGTGAATGACGAAGCTGGAGTGCGGATTAATAAGAGTTACCTTAGTATAATGACCAATGCAGGTGGATATGATAACATGGACTTTACGGAGCGAGATGCTAGGAACTACATTGGTAAACACAGAAGATCCTTATGTAAGGACGGTGATGGACAAGCATTGTTGCGACACTTTTCGGCAAAGAAAGATTTAAACAAAGATTTCTATTACGAGATTGAGTTGGATGAAGGGAATAGAATTTGCTCTGTTTTCTGGGCGGATGTGAGAAGTAGAGCTGCTGCTGAAGAATTTGGGGATGTGTTGTGTTTCGACACAACTTATTTAACCAATAAGTATGATATGCCTTTTGCGCCTTTTGTTGGGATCAATCATCACGGTCACTCCATATTACTTGGGTGTGGATTGTTGTCGTACGAAGACACAAAGTCTTTTGTGTGGTTGTTCCAATCATGGTTGCGATGCATGGGTAATACAGCCCCAATAGGGATTATAACCGATCAGTGTAGGGCAATGGCAAATGCCATTGAAGTAGTTTTTCCCAATACCAGGCATCGTTGGTGTTTATGGCACATCATGAAAAAGTTGCCAGAAAAATTTAGCGCTTGTAAGGAATATAATAGTATCAAATCACATATTAAGAAGCTTGTGTATGATTGTGGTTGTCCATCAGATTTTGAAAGTGGTTGGGAAGCACTAGTAAGCAGACATGGATTACATAAGAATGAATGGTTATGCACAATGTATGACGACAGACACAAATGGGTTCCTTGTTATTTGAAGAAAGATTTTTGGGCTGGCATGTCAACCACTCAAAGAAGTGAGGGAATGAATGCCTTTTTTGATGGATTTATAAATTCAAGCACAACCCTTCATCAATTTGTTGTGCAATATGACAATGCCCTAAGAGTTAAAGCCCAAAAAGAAATTCAAGCTGATTTCTCATCCCTTAACACGACGGTTGGATGTGGCTCTCAGTCACCAATAGAGAGAATATTTCAACAGGAGTACACACATTCAAAGTTTGAAGAAGTTCAAACCGAATTTAGGTCACGAATGAATTGTTTCATCAAAGACACTGTTAAGGATAACATGTCAAACACTTATACAATAAAAGAGGAGCGGCTATGGGATGGCAAAAGTGCAGACCAATATCATAAAGTACAATTTGATCCGATAACCAAAGATATCACTTGTTCCTGTTTACTCTTTGAGTTTCGGGGTATAATATGTCGGCACTCCCTTTTGGTTCTTGGACAGGAAGATGTTTGTAGTGTGCCCTCAAAATACGTTCTTCGTAGGTGGAGCAAGAATATCCGTAGAAGACACACTTTGATTAGAGCAGCGTATATTAACTCCAGTCTTCAACCTACCATGCAAAGATACCAAAGTTTGTGCAAAACATTCTATGAAATTGCTGAGGTAGGGTGTGAGTCAGAACTTGTTTCCACGGAGTTGGAGAAAGAACTGGATATGTTGCGTAAAAAGTTTGGCTGCAGTTCTACGATGACAACTAACATAGTCAGTGAAGGAGGCGAACTGCGTTACGACAATGTTGTCCCTACTTCCATACAACAAAGCAGTGGTGAAAGTGGTGATTTACTTGTACGTAGTCCCATAGCCGTCAAACGGAAGGGGAGACCTCGCACCAACAGGTTAAAGTCAGCCGTTGAGAAACGGACCAAAAAAGGAAAAAGTGTGTCAACGAAAAAGACTTCAAGAACATCCATTGCACAATGTGAACCTACATTCCCAAACCAAACACAATGTGATGAAGACATACAATTTGGATCCCAATCTTATCCATCCTACGATGTATCCCAACAATCCGACATAGCGCAATCTGGATTTATGTCATTGTTAAATGCGGTACACAACAACTATGATGACAAAATTGTATGA 2367 0.3992 MMDNIGSNMSEVVECRESTDDFGLIEAPDCYVTLDDPNKSPMDVDPTEAKKFYRNYAIRCGFAVRTRTSKKDDNNNVNYLRLVCSREGKYVSSINPEVKKLPSQTKQCPVGITISKKDDKWFIRTVNLDHSHDLCPTTSKLIPGNRKLSMQSKHTLEVNDEAGVRINKSYLSIMTNAGGYDNMDFTERDARNYIGKHRRSLCKDGDGQALLRHFSAKKDLNKDFYYEIELDEGNRICSVFWADVRSRAAAEEFGDVLCFDTTYLTNKYDMPFAPFVGINHHGHSILLGCGLLSYEDTKSFVWLFQSWLRCMGNTAPIGIITDQCRAMANAIEVVFPNTRHRWCLWHIMKKLPEKFSACKEYNSIKSHIKKLVYDCGCPSDFESGWEALVSRHGLHKNEWLCTMYDDRHKWVPCYLKKDFWAGMSTTQRSEGMNAFFDGFINSSTTLHQFVVQYDNALRVKAQKEIQADFSSLNTTVGCGSQSPIERIFQQEYTHSKFEEVQTEFRSRMNCFIKDTVKDNMSNTYTIKEERLWDGKSADQYHKVQFDPITKDITCSCLLFEFRGIICRHSLLVLGQEDVCSVPSKYVLRRWSKNIRRRHTLIRAAYINSSLQPTMQRYQSLCKTFYEIAEVGCESELVSTELEKELDMLRKKFGCSSTMTTNIVSEGGELRYDNVVPTSIQQSSGESGDLLVRSPIAVKRKGRPRTNRLKSAVEKRTKKGKSVSTKKTSRTSIAQCEPTFPNQTQCDEDIQFGSQSYPSYDVSQQSDIAQSGFMSLLNAVHNNYDDKIV 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00343 788 ProSiteProfiles Zinc finger SWIM-type profile. 541 577 IPR007527 GO:0008270
Vimu6g00343 788 Pfam FAR1 DNA-binding domain 51 135 IPR004330 -
Vimu6g00343 788 SMART 26again6 552 579 IPR006564 GO:0008270
Vimu6g00343 788 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 651 IPR031052 GO:0006355
Vimu6g00343 788 Pfam MULE transposase domain 256 350 IPR018289 -
Vimu6g00343 788 Pfam SWIM zinc finger 549 573 IPR007527 GO:0008270
Vimu6g00343 788 MobiDBLite consensus disorder prediction 701 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00343 Vimu-Chr6 4278075 4280551 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu6g00343 MULE 6.2e-34 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00343 - - vra:106778928 1192.95