Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00331 ATGAGTTTTGGGGGGTTTCTTGAGGTCAAACAAAGTGGTGGAGGGGGTAGGATCGTATCAGATATTCCTTACAGCAACGGTTCCAACCACAGCAACGATATAATGCCCTCTGGTGCAATCTCGCAGCCTCGTTTAGCCAGTCCTACTTTGGCCAAATCCATGTTTAACTCTCCTGGCCTTTCTCTTGCGCTTCAAAGTGATGTCGATGGACAAGGAGATATGAACAGATTAATGCCCGAGAATTTTGAACAAAATGGGTTGAGAAGGAGCCGGGAAGAGGAGCATGAAAGCAGATCTGGCAGTGATAACATGGATGGAGCTTCTGGTGATGATTTTGATGCCGCCGACAACCCACCAAGAAAAAAGCGTTATCACCGACACACTCCTCAGCAAATTCAAGAGCTTGAAGCGCTTTTCAAGGAGTGTCCTCACCCGGATGAGAAGCAAAGGCTTGAACTCAGCAGAAGGCTGAATTTGGAAACGAGGCAAGTAAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACACAATTGGAACGGCACGAGAACTCACTGCTAAGGCAAGAGAATGACAAGCTTAGAGCGGAGAACATGTCTATGAGGGAGGCTATGAGAAATCCTATGTGCTCAAACTGTGGTGGTCCTGCAATGATTGGTGAGATTTCACTTGAAGAACAGCATCTCAGGATCGAGAATGCTAGGTTGAAGGATGAATTAGACCGTGTTTGCGCACTCGCTGGCAAGTTTTTGGGTCGCCCCATTTCTTCTTTAACAAGCTCAATTGGGCCTCCATTGCCAAACTCAAGCTTGGAGCTTGGGGTTGGGAGCAATGGTTTTGGAGGTTTGAGCACTGTGCCTTCTACATTGCCTGATTTTGGGGTGGGGATATCAAGCCCCTTAGCTATGATGTCACCTTCAACTAGACCAACTGCAACATCAACTGTGGTGACTGCTGGGCTTGACAGGTCAGTGGAGAGGTCTATTGTTTTGGAACTTGCTTTGGCTGCAATGGATGAGCTGGTGAAGATGGCTCAGACCGGGGAGCCTCTTTGGATCAGGAGTTTGGAAGGGGGAAGAGAAATTCTCAACTATGAGGAGTACACAAGGACAATGACACCTTGCATTGGTTTGAGACCCAATGGTTTTGTCACCGAGGCCTCTAGACAAACTGGCATGGTCATCATAAACAGCTTGGCTCTTGTTGAAACATTAATGGACTCAAATCGATGGTCAGAGATGTTCCCTTGTATGATTGCTAGAACCTCAACCGCTGAAGTTATATCTAATGGAATAAATGGAACTAGGAATGGTGCCCTTCAGCTTATGCATGCTGAACTTCAAGTCCTTTCGCCCTTGGTTCCTGTTCGTGAGGTCAATTTTCTACGCTTTTGCAAGCAGCACGCAGAGGGCTTGTGGGCAGTGGTGGATGTGTCCATAGACACCATCCGAGAAACTTCTGGTGCACCCACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGCGTAGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAACATGCAGAATACGACGAAAGCCAAGTTCACCAGCTGTACAGACCCTTGTTGAGCTCAGGCACGGGGTTTGGTGCACAACGTTGGGTTGCCACCCTTCAACGCCAATGCGAGTGCTTAGCCATTCTAATGTCCTCAGCAGTACCCTCTAGAGAACATTCAGCAATAAGCTCAGGTGGAAGGAGGAGCATGCTGAAGCTAGCACAACGGATGACGAACAATTTCTGTGCTGGAGTTTGTGCCTCCACGGTGCACAAGTGGAACAAGCTGAACGCGGGGAACGTGGGGGAGGACGTGAGGGTGATGACAAGGAAGAGCGTGGACGACCCGGGTGAGCCGCCGGGTATTGTTCTCAGCGCGGCTACGTCGCTTATCATTTTATTTTTATTTTTCTTCTTGCAGGCTATGAATGCCAACCAGAGCAGCATGTTGATTTTGCAGGAGACGTGCACCGACGCCTCGGGGTCGCTTGTGGTGTACGCGCCGGTAGACATTCCCGCAATGCACGTAGTGATGAACGGCGGCGACTCTGCCTACGTGGCGCTTCTCCCGTCAGGGTTCGCCATCGTCCCTGATGGATCCGCGGCCGGCGGAGAGCAACACGGCGGCGCGTCACAAAAGAGGGCGAGTGGGTGTCTTCTGACGGTGGCGTTCCAGATTCTCGTGAACAGCCTCCCGACGGCGAAGCTGACGGTGGAGTCGGTAGAGACCGTGAACAACCTCATCTCGTGCACCGTGCAGAAGATAAAAGCAGCACTTCACAGCGAGAGTTGA 2325 0.5006 MSFGGFLEVKQSGGGGRIVSDIPYSNGSNHSNDIMPSGAISQPRLASPTLAKSMFNSPGLSLALQSDVDGQGDMNRLMPENFEQNGLRRSREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPMCSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTSSIGPPLPNSSLELGVGSNGFGGLSTVPSTLPDFGVGISSPLAMMSPSTRPTATSTVVTAGLDRSVERSIVLELALAAMDELVKMAQTGEPLWIRSLEGGREILNYEEYTRTMTPCIGLRPNGFVTEASRQTGMVIINSLALVETLMDSNRWSEMFPCMIARTSTAEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGLWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSSAVPSREHSAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSLIILFLFFFLQAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGSAAGGEQHGGASQKRASGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHSES 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00331 774 ProSiteProfiles START domain profile. 323 559 IPR002913 GO:0008289
Vimu6g00331 774 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Vimu6g00331 774 MobiDBLite consensus disorder prediction 85 101 - -
Vimu6g00331 774 CDD homeodomain 120 178 IPR001356 GO:0003677
Vimu6g00331 774 CDD START_ArGLABRA2_like 327 555 - -
Vimu6g00331 774 FunFam Homeobox-leucine zipper protein HDG1 108 194 - -
Vimu6g00331 774 SMART HOX_1 119 182 IPR001356 GO:0003677
Vimu6g00331 774 SUPERFAMILY Bet v1-like 326 556 - -
Vimu6g00331 774 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Vimu6g00331 774 SUPERFAMILY Bet v1-like 584 767 - -
Vimu6g00331 774 Coils Coil 172 207 - -
Vimu6g00331 774 Gene3D - 108 194 - -
Vimu6g00331 774 FunFam Homeobox-leucine zipper protein GLABRA 2 332 555 - -
Vimu6g00331 774 SUPERFAMILY Homeodomain-like 104 178 IPR009057 -
Vimu6g00331 774 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 117 643 IPR042160 -
Vimu6g00331 774 Pfam Homeodomain 121 176 IPR001356 GO:0003677
Vimu6g00331 774 SMART START_1 332 556 IPR002913 GO:0008289
Vimu6g00331 774 MobiDBLite consensus disorder prediction 66 128 - -
Vimu6g00331 774 Pfam START domain 332 556 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00331 Vimu-Chr6 4080007 4085192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00331 1 774 Homeobox Transcription Factor Family AT3G61150 60.380 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu6g00331 START 4.5e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00331 K09338 - gmx:100787537 1380.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00331 6 4080007 4085192 Vimu6g00331 6 4080007 4085192 ECH