Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00330 ATGATATGTTCCTATTGTGTTAGTGAAATCCAAACCATTTCTTTTCAGGGAGGTGATTCTACCACAAAAAGACCTAAGTTTGATCAAGGAACCGAAGAAAAGGTCTTTGAGGAAACAGATTCCATGGAGAAATGTGGAAAAGATCACGAGCAGTATGGAGATGCATTGTCAGAAAGTGTTAATTCCAATATTGCTACAACCAGATCTGAGAAGTCAGGTTATGATGAACTTCCAAAGGAATTAAATGAAATGAAAATTGGAGACGACAAAGGAAAAAATAACAATGAGAAGGATATGGAAGCCACTGTTGTAAATGGTAATGGAACAGAAACAGGCCAAATAATTACAACTGCTATTGGTGGTCGAGATGGACAACCAAAGCGGACAATCTCGTACATGGCAGAACGCATAGTTGGCACAGGTTCTTTTGGTGTTGTTTATCAGGCCAAGTGCATTGAAACTGGTGAAGCAGTTGCCATAAAAAAAGTATTGCAAGACAAGAGATATAAGAATAGGGAACTACAGGTTATGCGTATACTTGACCATATTAATGTTCTCAGACTAAAGCACTGTTTCTACTCAGCAGCGGAGAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTATGTGCCTGAAACGGTCTACAGAGTTTCCAAGCACTACATCAGAATGCACCAACATATGCCTATCATTTATGTGCAACTGTATTTGTACCAGATATGCCGGGGTTTAAATTATTTGCATCACGTGATTGGAGTCTGTCATAGGGACATCAAACCCCAGAATCTATTGGTTAATCCCCAGAGTCATCAGTTAAAGATTTGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGCGAACCCAACATATCATACATATGCTCGCGGTATTACAGAGCTCCAGAGCTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTTGGTCTGCTGGTTGTGTTATGGCTGAGCTTCTTCTAGGACATCCAATGTTTCCTGGAGAGAGTGGTGTTGATCAGTTGGTTGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACTGAATTTAAGTTTCCTCAGATAAAAGCTCACCCGTGGCACAAGGTTTTCCACAAGAAGATGCCAACAGAAGCAGTGGATCTAGTGTCTAGGATGCTTCAGTATTCACCAAATCTACGTTGCACTGCTTTGGAGGCTTGTGCACACCCTTTCTTTGATGATCTGCGAGAGCCAAATGCATGCTTGCCAAATGGTCGACCACTGCCTCCGTTGTTTGATTTCAGTGCACAAGATAACCACACCAGCAATGCTACTTTTCCTAACAGTCTAGGTCTCTGCTGTCCATCCTACACAATCATGACTATTCAGCTCATAGGAAACCTTAAAGCCATGCAACCTCTTGGTCGTCAAGGACTGGCAGGTGACACAATCTGA 1467 0.4138 MICSYCVSEIQTISFQGGDSTTKRPKFDQGTEEKVFEETDSMEKCGKDHEQYGDALSESVNSNIATTRSEKSGYDELPKELNEMKIGDDKGKNNNEKDMEATVVNGNGTETGQIITTAIGGRDGQPKRTISYMAERIVGTGSFGVVYQAKCIETGEAVAIKKVLQDKRYKNRELQVMRILDHINVLRLKHCFYSAAEKDELYLNLVLEYVPETVYRVSKHYIRMHQHMPIIYVQLYLYQICRGLNYLHHVIGVCHRDIKPQNLLVNPQSHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVMAELLLGHPMFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKKMPTEAVDLVSRMLQYSPNLRCTALEACAHPFFDDLREPNACLPNGRPLPPLFDFSAQDNHTSNATFPNSLGLCCPSYTIMTIQLIGNLKAMQPLGRQGLAGDTI 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00330 488 SUPERFAMILY Protein kinase-like (PK-like) 131 447 IPR011009 -
Vimu6g00330 488 MobiDBLite consensus disorder prediction 17 44 - -
Vimu6g00330 488 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00330 488 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00330 488 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00330 488 FunFam Glycogen synthase kinase-3 beta 116 211 - -
Vimu6g00330 488 ProSitePatterns Protein kinases ATP-binding region signature. 138 162 IPR017441 GO:0005524
Vimu6g00330 488 MobiDBLite consensus disorder prediction 25 44 - -
Vimu6g00330 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Vimu6g00330 488 Gene3D Transferase(Phosphotransferase) domain 1 212 454 - -
Vimu6g00330 488 Gene3D Phosphorylase Kinase; domain 1 117 211 - -
Vimu6g00330 488 MobiDBLite consensus disorder prediction 62 95 - -
Vimu6g00330 488 MobiDBLite consensus disorder prediction 72 95 - -
Vimu6g00330 488 CDD STKc_GSK3 127 419 IPR039192 -
Vimu6g00330 488 FunFam Shaggy-related protein kinase kappa 212 454 - -
Vimu6g00330 488 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 96 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00330 Vimu-Chr6 4043582 4047397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00330 138 425 Core Cell Cycle Gene Families AT1G76540 34.680 1.71e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vimu6g00330 Pkinase 1.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00330 K27414 - gmx:100786458 802.357