Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00329 ATGAATCAGGTTGAAGGGGCAACGAAGGAAGAGATTGACCAGTTGCCAAAATATAAGTTCAGAATAATAAAAGAAGGTGATATTGAAGAATCTTCAAGAGGAATAATGATCGAATCTGAGAGTGAGACAGCCACCGAACATGTTGTTGCCTTAGAAGATGCAGAATGCTGTATCTGTCTCTCTCCATATGATGATGGTGCTGAAATCAGAGAACTTCCTTGCAACCACCATTTTCATTGCGCATGCATAGACAAATGGCTGCTAATCAATGCTTCCTGCCCTCTCTGCAAGCTTGATATTTTGGTTGGTAACCACCATCATGAAGTTTGA 330 0.4091 MNQVEGATKEEIDQLPKYKFRIIKEGDIEESSRGIMIESESETATEHVVALEDAECCICLSPYDDGAEIRELPCNHHFHCACIDKWLLINASCPLCKLDILVGNHHHEV 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00329 109 ProSiteProfiles Zinc finger RING-type profile. 56 97 IPR001841 -
Vimu6g00329 109 SUPERFAMILY RING/U-box 36 102 - -
Vimu6g00329 109 PANTHER TARGET OF ERK KINASE MPK-1 4 100 - -
Vimu6g00329 109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 101 IPR013083 -
Vimu6g00329 109 Pfam Ring finger domain 55 97 IPR001841 -
Vimu6g00329 109 SMART ring_2 56 96 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00329 Vimu-Chr6 4023850 4027131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00329 5 106 C3H Transcription Factor Family AT1G68070 48.571 6.27e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00329 - - gmx:100795425 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00329 6 4023850 4027131 Vimu6g00329 6 4023850 4027131 ECH