Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00319 TTGGGAGCTCATACACAGAGCAGAGGAAATGCACTTGAGACCTATTTAAATGTTCTATCTTCTGTGAAGGGAAGCTACCTTGAAGCCAAAGAATCTATGGTGCATAGTTACTCAAGGAACTTCAATGCATTTGCTGCAAAACTGTCAGAAGATGAAGCCAAGAAGTTATCTGCCATGGATGAAGTGCTTTTAGTGTTTCAAAATCAGTACCGTCAGTTACACACAACAAGATCATGGAATTTCATTGGGTTACCTCCAACAGCCAAAAGAAGATTGAAAGTAGAAAGTGACATAATTGTTGGTGTTATAGACACAGGGATCACACCTGAGTCTAAAAGCTTTAAAGACAATGGATTTGGTCCTCCACCAGCAAGATGGAAAGGATCTTGTGGCCATTATGCTAATTTCTCAGGCTGCAATAAAAAGCTCATAGGAGCCACGTACTTCAAGGCTGATGGAAACCCTGATCCATCAGACATATTATCTCCTGTGGATACTGATGGACACGGCACTCACACTGCATCAACAGTTGCAGGAAATCTGATCCCAAATGCAAATCTCTTTGGGTTGGCCAATGGGACTGCTCGAGGTGCAGTGCCATCGGCAAGATTGGCAATTTACAAAGTTTGCTGGTCATTAAGTGGATGTGCAGACATGGACTTACTTGCTGCATTTGATGCTGCTGTACATGATGGTGTGGATGTCATATCTATTTCCATAGGTGGAGGAAATCCTAGTTATGTTCAAGACTCTATATCAATTGGTGCATTTCATGCCATGAAAAAAGGTATAATCACAGTGGCCTCAGCTGGAAATGCTGGTCCAAGCTTGGGAACTGTAACAAATACTGCACCATGGATTGTAACTGTAGCAGCTAGTGGCATTGATAGGGCCTTCAAGAGCACTGTACAGTTGGGAAATGGAAAGAATTTTTCTGGGGTAGGCGTGAGCTGTTTTGATCCAAAAGGAAAACAGTATCCTCTTGTCAATGGGATTGATGCAGCCAAAGATCCAAAAGACAAGGAGGACGCTAGTTTCTGCTATGAAGGCAGCTTACAGCCAAATAAAGTGAAGGGAAAGCTTGTTTACTGCAGATTAGGAGCATGGGGTACTGAATCTGTTGTTAAAGGAATTGGGGGCATTGGTACTTTAATAGAAAGTGACCAATTTCCTGATATTGCTCAAATTTTCATGGCACCTGCTACCATTGTGAATAGTGTACAAGGGAACACTGTTACAAAATATATACAATCCACAAGATCACCATCTGCAATGATATACAAAAGCCACGAGGTGCAAGTGCGAGCTCCATTTACTGCTACATTTTCATCTAGAGGCCCAAGTTCAGTATCCCAAAATGTTCTCAAGCCTGATATTGCAGCTCCTGGCATTGACATCCTGGCATCTTATACTCTCAAAAAGTCACTCACTGGTTTAAAGGGGGACACTCAATTTTCAGAATTTATTCTAATGTCTGGAACTTCCATGGCATGTCCTCATGTTTCTGGAGTTGCTGCATATGTTAAGTCATTTCACCCACATTGGACTCCTGCTGCAATTAGGTCTGCTATTATCACAACAGCCAAACCAATGAGCAAGAGAATTAACAGTGAGGCAGAATTTGCTTACGGTGCTGGTCAATTGAACCCAACAAGAGCTGTTAGCCCTGGTTTGGTCTATGACATGGATGAGTTAGGGTATATCCAATTCTTATGCCATGAGGGGTACAAAGGTTCCAGTTTATCAGCTTTAGTTGGTTCACCAGTAAATTGCTCCTCTTTGCTTCCTGGGCTTGGCCATGATGCTATCAACTACCCCACAATGCAGTTGAGCCTTGAAAGCAGCAAAGACACAAAGGTAGGAGTTTTCAGAAGAACAGTGACCAATGTAGGTCCTGCTCCAACCATCTACAATGCCACCATCATTTCACCTAAGGGAATGGAAATCACAGTGAAGCCAACTAGCCTCACTTTTTCTGAAACCAAGAAGAAGAGGAGCTTCAAAGTAGTTGTGAAAGTCAAATCTATTGGAAGTAATAAAATTGTATCAGGTTCCCTTATATGGAGAAGCCCACGTTACATTGTAAGGAGTCCTATTGTTATCAACATTCCATAA 2115 0.4213 MGAHTQSRGNALETYLNVLSSVKGSYLEAKESMVHSYSRNFNAFAAKLSEDEAKKLSAMDEVLLVFQNQYRQLHTTRSWNFIGLPPTAKRRLKVESDIIVGVIDTGITPESKSFKDNGFGPPPARWKGSCGHYANFSGCNKKLIGATYFKADGNPDPSDILSPVDTDGHGTHTASTVAGNLIPNANLFGLANGTARGAVPSARLAIYKVCWSLSGCADMDLLAAFDAAVHDGVDVISISIGGGNPSYVQDSISIGAFHAMKKGIITVASAGNAGPSLGTVTNTAPWIVTVAASGIDRAFKSTVQLGNGKNFSGVGVSCFDPKGKQYPLVNGIDAAKDPKDKEDASFCYEGSLQPNKVKGKLVYCRLGAWGTESVVKGIGGIGTLIESDQFPDIAQIFMAPATIVNSVQGNTVTKYIQSTRSPSAMIYKSHEVQVRAPFTATFSSRGPSSVSQNVLKPDIAAPGIDILASYTLKKSLTGLKGDTQFSEFILMSGTSMACPHVSGVAAYVKSFHPHWTPAAIRSAIITTAKPMSKRINSEAEFAYGAGQLNPTRAVSPGLVYDMDELGYIQFLCHEGYKGSSLSALVGSPVNCSSLLPGLGHDAINYPTMQLSLESSKDTKVGVFRRTVTNVGPAPTIYNATIISPKGMEITVKPTSLTFSETKKKRSFKVVVKVKSIGSNKIVSGSLIWRSPRYIVRSPIVINIP 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00319 704 CDD Peptidases_S8_3 72 528 IPR034197 -
Vimu6g00319 704 Gene3D Peptidase S8/S53 domain 97 565 IPR036852 GO:0004252|GO:0006508
Vimu6g00319 704 Gene3D - 571 703 - -
Vimu6g00319 704 ProSiteProfiles Serine proteases, subtilase domain profile. 78 554 - -
Vimu6g00319 704 Pfam Peptidase inhibitor I9 19 74 IPR010259 -
Vimu6g00319 704 PRINTS Subtilisin serine protease family (S8) signature 165 178 IPR015500 -
Vimu6g00319 704 PRINTS Subtilisin serine protease family (S8) signature 492 508 IPR015500 -
Vimu6g00319 704 PRINTS Subtilisin serine protease family (S8) signature 95 114 IPR015500 -
Vimu6g00319 704 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 74 IPR037045 -
Vimu6g00319 704 SUPERFAMILY Subtilisin-like 73 558 IPR036852 GO:0004252|GO:0006508
Vimu6g00319 704 CDD PA_subtilisin_like 302 426 - -
Vimu6g00319 704 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 700 IPR045051 -
Vimu6g00319 704 ProSitePatterns Serine proteases, subtilase family, serine active site. 493 503 IPR023828 -
Vimu6g00319 704 Gene3D - 296 432 - -
Vimu6g00319 704 Pfam Fibronectin type-III domain 603 701 IPR041469 -
Vimu6g00319 704 FunFam Subtilisin-like protease SBT1.5 97 322 - -
Vimu6g00319 704 Pfam Subtilase family 96 546 IPR000209 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00319 Vimu-Chr6 3858471 3862949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00319 1 542 Subtilisin-like Serine Gene Family AT4G00230 64.207 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00319 - - gmx:100795950 1238.02