LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g00316	ATGTCTGATTCTCCTTTTCTGGGTTTTCAAATCTTGCTAGGAGAAGGCTCAATTTTGGTGGAAACCTCTCGTAGAAGAAAGCATAGTTTCTGGAGGTTTGTAGAGATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTTACCTTCTCCAAGCGGCGCAATGGGTTACTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTCCAAGAGGAAAGCTTTATGAGTTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCTGATGAGAAGAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAGCTCTTGGGAGAAGGATTGGGTTCATGCTCCTTGGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAATGTTCGTGCAAGAAAGAATCAGGTTTACAAGGATCAAATCGAGCAACTAAAAGAAAAGGAAAGAACCCTATATGCTGAAAATGCCAGGCTGTGTGAGCAGTATGGTATCCAGCAACAGCCAGGAACAAAGGATGTGAGAGAAAATCAACCCTATGAAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAGTTGTTCATTGGACTACCTAGGTCTACTTTAACATAA	741	0.4332	MSDSPFLGFQILLGEGSILVETSRRRKHSFWRFVEMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHNRSAQTVNRSDEKNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSNVRARKNQVYKDQIEQLKEKERTLYAENARLCEQYGIQQQPGTKDVRENQPYEESSPSSEVETELFIGLPRSTLT	246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g00316	246	MobiDBLite	consensus disorder prediction	207	246	-	-
	Vimu6g00316	246	PRINTS	MADS domain signature	73	94	IPR002100	GO:0003677\|GO:0046983
	Vimu6g00316	246	PRINTS	MADS domain signature	58	73	IPR002100	GO:0003677\|GO:0046983
	Vimu6g00316	246	PRINTS	MADS domain signature	38	58	IPR002100	GO:0003677\|GO:0046983
	Vimu6g00316	246	Pfam	K-box region	118	205	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vimu6g00316	246	Gene3D	-	48	132	IPR036879	GO:0003677\|GO:0046983
	Vimu6g00316	246	SUPERFAMILY	SRF-like	38	118	IPR036879	GO:0003677\|GO:0046983
	Vimu6g00316	246	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	45	92	IPR002100	GO:0003677\|GO:0046983
	Vimu6g00316	246	Coils	Coil	115	142	-	-
	Vimu6g00316	246	CDD	MADS_MEF2_like	38	113	IPR033896	GO:0000977\|GO:0045944
	Vimu6g00316	246	ProSiteProfiles	MADS-box domain profile.	36	96	IPR002100	GO:0003677\|GO:0046983
	Vimu6g00316	246	ProSitePatterns	MADS-box domain signature.	38	92	IPR002100	GO:0003677\|GO:0046983
	Vimu6g00316	246	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	38	215	-	-
	Vimu6g00316	246	MobiDBLite	consensus disorder prediction	207	233	-	-
	Vimu6g00316	246	Coils	Coil	156	205	-	-
	Vimu6g00316	246	ProSiteProfiles	K-box domain profile.	122	212	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vimu6g00316	246	FunFam	MADS-box protein SOC1	49	130	-	-
	Vimu6g00316	246	SMART	madsneu2	36	95	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g00316	Vimu-Chr6	3802556	3815525	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g00316	36	191	MADS-box Gene Family	AT2G45660	78.205	4.42e-86	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Vimu6g00316		K-box	9e-28	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g00316	-		-	gmx:100037477	372.859

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu6g00316	6	3802556	3815525	Vimu9g00463	9	5520544	5525399	PCT