Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00299 ATGAGTTTCTTGCAGGGAATTATTGATTCCATAAACTCCATCTTCGTCCCAGATAATAATCACAACACAGCAAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAGGATCCAATGGAAGCTCCTCCTCCTTCCGTTTCGAACGAGCGCGTGGCTTACAAGCTGAAAGGCTACTTCGATTTGGCGACGCAGGAGATCGCGAAGGCCGTTAGGGCTGAGGAATGGGGTTTGGCAAACGACGCGCTTCTTCACTACAGGAACGCGGAATCCATCCTTGTCGAAGCTAATTCAACTCCAGTTCCTTCCTACATCACATCCAGTGAACAGCAGAAGGTGCACTCATATCGTGAGAAGATATCCAAATGGCAGAGTCAAGTTTCTGAGAGATTGCAGACTCTCGCTAGACGAGCTGGTAGCTCATTAGCCAATCAGAGCACTGCTGCAATACCGATCAAGCCATTGGGTACTAGAAAAAATGTGTTACAAAAGGCCCCTCAAAGAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCGAGTCAAGCATCTGATATAAATTATGATACCAAACTAGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCATCTGTTAGATGGGAAGATGTTGCCGGGCTCGAAAAGGCAAAGCAATCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTTACGGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCGTCAGAATCACAAGCAACATTTTTTAATGTCACGGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCAAGACAGCCATCAGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACGTACCTTTACCAGATGAAAATGTTCGAAAGCTTCTGTTAAAACACAAGCTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGAAGCTTGTAAAAGAGACAGAAGGATATTCTGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGTTGGGTGCTGACATTCTTACTGTTAAGGCTAATCAGGCATGCTATTTGATTTGA 1350 0.4274 MSFLQGIIDSINSIFVPDNNHNTANSSSSSSSSSSSSKDPMEAPPPSVSNERVAYKLKGYFDLATQEIAKAVRAEEWGLANDALLHYRNAESILVEANSTPVPSYITSSEQQKVHSYREKISKWQSQVSERLQTLARRAGSSLANQSTAAIPIKPLGTRKNVLQKAPQRTGQVNKVGSPKSSQASDINYDTKLVEMINTAIVDRSPSVRWEDVAGLEKAKQSLMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLKHKLKGQAFSLPSRDLEKLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVKANQACYLI 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00299 449 CDD MIT_spastin 57 135 - -
Vimu6g00299 449 FunFam Spastin, putative 206 390 - -
Vimu6g00299 449 ProSitePatterns AAA-protein family signature. 349 368 IPR003960 GO:0005524|GO:0016887
Vimu6g00299 449 MobiDBLite consensus disorder prediction 22 49 - -
Vimu6g00299 449 Gene3D - 378 444 - -
Vimu6g00299 449 CDD RecA-like_spastin 212 375 - -
Vimu6g00299 449 MobiDBLite consensus disorder prediction 22 43 - -
Vimu6g00299 449 FunFam AAA-type ATPase family protein 50 139 - -
Vimu6g00299 449 Gene3D - 206 377 IPR027417 -
Vimu6g00299 449 Gene3D - 49 139 - -
Vimu6g00299 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 432 IPR027417 -
Vimu6g00299 449 FunFam Fidgetin like 1 378 446 - -
Vimu6g00299 449 PANTHER AAA DOMAIN-CONTAINING 109 444 - -
Vimu6g00299 449 Pfam AAA+ lid domain 402 433 IPR041569 -
Vimu6g00299 449 SMART AAA_5 243 379 IPR003593 GO:0016887
Vimu6g00299 449 Pfam ATPase family associated with various cellular activities (AAA) 247 377 IPR003959 GO:0005524|GO:0016887
Vimu6g00299 449 SMART smart 57 134 IPR007330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00299 Vimu-Chr6 3618780 3623731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00299 188 432 Calmodulin-binding Proteins AT3G56690 41.339 6.12e-49 177