Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00287 ATGGAGGTCCCTAAGAAGATTTTTGGTATTAACAACGGTGAAAAAGGCTACAAAACAGCTCATTTGCCTGGAAGAGTTCGGGTGGCTGTAAGATTGAGACCACGAAATGCTGAAGAAATGATGGCTGATGCTGATTTTGCTGACTGTGTTGAATTACAACCAGAGCTTAAAAGACTGAAACTTCGTAGAAACAATTGGGATTCTGACACATATGAGTTTGATGAGGTGCTTACTGAATTTGCATCACAGAAACGTGTCTATGAAGTTGTGGCTAAGCCAGTTGTGGAGAGTGTTCTTGATGGTTATAATGGTACTGTGATGGCTTATGGTCAAACTGGAACTGGGAAAACTTTTACACTTGGACGACTTGGGGAAGTTGACACTTCTGATCGTGGTATCATGGTCCGTTCCATGGAGGATATTTTTGCTGACTTGTCACCCAATACTGATTCTGTCACAGTCTCGTATCTGCAGCTTTACATGGAGACTCTCCAGGACTTGCTTAATCCAGCAAATGATAATATTCCTATAGTGGAAGATCCAAGAAGTGGTGATGTATCTATGCCTGGGGCAACTCTTGTAGAAATCACAGACCAACATAGTTTTCTGGAGCTGTTAAGAGTAGGGGAAGCTAATAGAATTGCTGCTAACACAAAATTGAATACTGAATCTTCTCGCAGTCATGCTATTCTGATGGTTCATATTAAGAGGTCTGTCTTGGAAAGTGAAGATATTGTATCTAGTCAAAATGGCGATGCCTCTCATTTGACTAAACCTTCAAAACCACTTGTTCGGAAGAGCAAGTTGGTTGTGGTAGACTTGGCAGGTTCAGAACGTGTCCACAAGTCAGGAAGTGAAGGGCACATGCTAGAGGAAGCTAAATCTATCAATCTTTCACTTAGTTCATTGGGAAAATGTATTAATGCTCTAGCAGAGAACAATGCTCATGTTCCATTTCGTGATTCAAAGCTTACCAGAATGCTTCGAGACTCTTTTGGTGGCACAGCTAGGACTTCATTGATTGTGACTATTGGCCCATCACCACGTCATCGAGGAGAGACTTCTAGTACCATATTGTTTGGCCAGAGGGCTATGAAAGTTGAGAATATGTTGAAAATAAAGGAGGAATTTGATTATAAAAGTTTGTCTCGAAAGCTTGAGGTACAATTAGATAAGCTTATTGCAGAAAATGAAAGGCAGCACAAAGCTTTTGAGGATGAAGTTGAGAAAATAAATTTGGAGGCCCAATGTCGAATTGCCGAGGTGGAGAGGACCTTTGCAGATGCATTGGAGAAAGAGAGATTGAAATGCCAGATGGAGTACATGGAATTGGTAAAGGAGTTGGAGCAGAAGCTGGTCTTGAATCAAGAAAGACAGACATGCAATAGTTCTGTGGTTGATAATGGAGAGGGGCCCGCATCATCTTCAGCAGGTGAAGTTACTGAGGTCAAAATGCTGCTTGAAACTGAAAGAAGTCGGAGGAAGGCAGCTGAAGAAGAGGTAGAACATCTAAAAATTCAACTGGGGAAATACACACAAACACAGGCAGGAGATGCCGAAATTGTAAAGCTTCGGAACATCTTGGAGGATGAGGCTAATCAGAAAAAAAGACTTGAAGAAGAAGTAATAATATTGAGAAGTCAATTATTGCAATTGAACTTTGAAGCTGACCAGATGAGAAAGTGTTTGGAAAATGGAAGCTCTGGGAGCACATTTTCTGCCATGGATTCCTCCCGGCCTACCCAATTCAAGGACACTGCAAATGGTCAGAAGTCATCTGTTGCTACTCTCTTTGAGCAAGTTGGACTGCAAAAGATTTTGTCGTTGCTGGAGTCAGATGATGCCAATGTACGAATTCATGCTGTGAAAGTGGTAGCCAACCTAGCTGCCGAAGAGGCTAATCAAAAGAGAATTGTTGAGGCTGGGGGGCTTACTTCCTTGCTGATGCTTCTTCGAAGATATGAGGATGAAACTGTTCGCAGAGTAGCTGCTGGGGCAATTGCCAATCTTGCTATGAATGAAGCGAATCAAGAACTTATTATGGCTGAAGGAGGAATTACTCTGTTATCAATGACTGCATCTGATGCTGAAGATCCACAAACTCTTCGAATGGTTGCTGGGGCAATTGCTAACTTATGTGGAAATGATAGAATATTGATGACTCTGAGATCCCAGGGAGGTATTAAGGCTTTACTGGGAATCGTAAGATGTGGACATCCAGATGTCCTTTCCCAAGTTGCACGAGGAATTGCAAACTTCGCAAAATGCGAGTCTCGAGCTTCCAATCAAGGGATAAAAAGTGGCAGATCTTTTTTGATAGAAGATGGTGCACTTCCGTGGATAGTACAAAATGCTAATAACGAAGCTGCACCAATCAGGCGTCACTTAGAGCTTGCACTATGCCACTTGGCACAGCATGAAGTGAATGCAAAGGACCTGGTTAGTGGAGGTGCTCTTTGGGAGCTTGTTCGAATTTCACGAGATTGTTCACGAGAGGATATACGGAATCTTGCTCGTCGGACTCTCAGTTCTGTCTCAACATTCAAAGCCGAATTGCGACGCCTACGTATAGATTATTAA 2580 0.424 MEVPKKIFGINNGEKGYKTAHLPGRVRVAVRLRPRNAEEMMADADFADCVELQPELKRLKLRRNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGEVDTSDRGIMVRSMEDIFADLSPNTDSVTVSYLQLYMETLQDLLNPANDNIPIVEDPRSGDVSMPGATLVEITDQHSFLELLRVGEANRIAANTKLNTESSRSHAILMVHIKRSVLESEDIVSSQNGDASHLTKPSKPLVRKSKLVVVDLAGSERVHKSGSEGHMLEEAKSINLSLSSLGKCINALAENNAHVPFRDSKLTRMLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEVQLDKLIAENERQHKAFEDEVEKINLEAQCRIAEVERTFADALEKERLKCQMEYMELVKELEQKLVLNQERQTCNSSVVDNGEGPASSSAGEVTEVKMLLETERSRRKAAEEEVEHLKIQLGKYTQTQAGDAEIVKLRNILEDEANQKKRLEEEVIILRSQLLQLNFEADQMRKCLENGSSGSTFSAMDSSRPTQFKDTANGQKSSVATLFEQVGLQKILSLLESDDANVRIHAVKVVANLAAEEANQKRIVEAGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMTASDAEDPQTLRMVAGAIANLCGNDRILMTLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRASNQGIKSGRSFLIEDGALPWIVQNANNEAAPIRRHLELALCHLAQHEVNAKDLVSGGALWELVRISRDCSREDIRNLARRTLSSVSTFKAELRRLRIDY 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00287 859 FunFam Kinesin-like protein 571 847 - -
Vimu6g00287 859 SMART arm_5 805 847 IPR000225 GO:0005515
Vimu6g00287 859 SMART arm_5 631 672 IPR000225 GO:0005515
Vimu6g00287 859 SMART arm_5 591 630 IPR000225 GO:0005515
Vimu6g00287 859 SMART arm_5 715 755 IPR000225 GO:0005515
Vimu6g00287 859 SMART arm_5 673 714 IPR000225 GO:0005515
Vimu6g00287 859 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 401 IPR027417 -
Vimu6g00287 859 Coils Coil 427 447 - -
Vimu6g00287 859 SMART kinesin_4 23 375 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g00287 859 Gene3D - 692 857 IPR011989 -
Vimu6g00287 859 Coils Coil 521 555 - -
Vimu6g00287 859 CDD KISc 25 365 - -
Vimu6g00287 859 ProSiteProfiles Kinesin motor domain profile. 25 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g00287 859 FunFam Kinesin-like protein 17 397 - -
Vimu6g00287 859 PANTHER CENTROMERE PROTEIN E 25 585 IPR027640 GO:0003777|GO:0007018
Vimu6g00287 859 ProSitePatterns Kinesin motor domain signature. 267 278 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vimu6g00287 859 Coils Coil 480 514 - -
Vimu6g00287 859 PRINTS Kinesin heavy chain signature 268 286 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g00287 859 PRINTS Kinesin heavy chain signature 317 338 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g00287 859 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g00287 859 Pfam Armadillo/beta-catenin-like repeat 634 671 IPR000225 GO:0005515
Vimu6g00287 859 Gene3D - 584 691 IPR011989 -
Vimu6g00287 859 Coils Coil 383 414 - -
Vimu6g00287 859 Pfam Kinesin motor domain 31 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g00287 859 Gene3D Kinesin motor domain 16 397 IPR036961 -
Vimu6g00287 859 SUPERFAMILY ARM repeat 592 849 IPR016024 -
Vimu6g00287 859 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 685 IPR000225 GO:0005515
Vimu6g00287 859 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 601 643 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00287 Vimu-Chr6 3496502 3507580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00287 22 400 Calmodulin-binding Proteins AT5G65930 34.848 9.00e-47 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00287 - K10396 pvu:PHAVU_008G075500g 1556.19