Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00281 ATGAATACTGGTAGCGGTAACGGTAATTCTGGTAGTCCTTGTGGAGCTTGCAAGTTCCTGAGGAGGAAATGCATTCAGGGTTGTATCTTCGCTCCGTATTTCGATTCGGAGCAAGGTACAACCCATTTCGCTTCTGTGCACAAGGTTTTTGGGGCTAGTAACGTGTCCAAGCTTCTCCTCAGCATTCCTATGCACAAGAGGCTTGATGCTGTCATCACCATTTGTTATGAAGCACAATCACGCCTCAGAGATCCTGTTTACGGCTGTGTTTCGCACATCTTTGCCCTTCAGCAACAGGTGGTGAGCTTGCAAGCAGAACTCTCATACCTACAAGGCCACCTTGCCCAGATGGAGGGACCTCATCCGGCGCCACCTCCTCCATCTCAACCGGCGACGGCACTGCGATTCTCAATGTCTGATTTACCATCGGCGGCCACCGGAGCTGTGGCGCCGTCCACCACTTATGATTTGTCTTCACTTTTTGATACGTCGGGGCAAATTTCATGGGCCATGCAACAAAGGGCATTTGACCCACGTCAATACGTGGCAGCTCCTCCATCAAGTTCTACTAGGGCTAACGTGGAAGCATTGGCACGTGACCTTCCTCGTGGGCATGGCTCTCCTCCATCACCTCCTGCATCAAGCTGCAATGCTTCACCATCTCTATCTCTTTCCAAATGA 681 0.511 MNTGSGNGNSGSPCGACKFLRRKCIQGCIFAPYFDSEQGTTHFASVHKVFGASNVSKLLLSIPMHKRLDAVITICYEAQSRLRDPVYGCVSHIFALQQQVVSLQAELSYLQGHLAQMEGPHPAPPPPSQPATALRFSMSDLPSAATGAVAPSTTYDLSSLFDTSGQISWAMQQRAFDPRQYVAAPPSSSTRANVEALARDLPRGHGSPPSPPASSCNASPSLSLSK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00281 226 MobiDBLite consensus disorder prediction 182 226 - -
Vimu6g00281 226 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Vimu6g00281 226 Pfam Lateral organ boundaries (LOB) domain 13 111 IPR004883 -
Vimu6g00281 226 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00281 Vimu-Chr6 3366991 3370180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00281 16 226 AS2 family AT2G45420 54.348 1.47e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu6g00281 LOB 6.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00281 K21994 - gmx:100777737 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00281 6 3366991 3370180 Vimu6g00281 6 3366991 3370180 ECH
Vimu6g00281 6 3366991 3370180 Vimu9g00554 9 6759601 6762759 PCT