Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00276 ATGGCTAAAGTTTTGAATGGATCTGCTAATTCATCTGAACAACTTCTAAAGAAACCAAAGTCTGTGTCTTTTGTTTTTCTTTTCCCTAGTTTGTTGGAATCCTTTGATGGGTTTTCACTTTGGCTTCCTAGCATGTTCAAGAAGGTTCAAACTTTTGATGCTGGTTTGATTGAGGGGACTAAGGAAAGGGAAGTGTTTGATATATGCATGGAAGGAAGAGAAGGGATGAGTTCTGGGGTTACAGTGATAGGAGCAGAAGCTCCATCAGCCTATCACATGGCACCAAGGAGTGAAGCTCCAAGTCAGGGTGGTCCTCCTGTGCCTGAAGCACCAGCTGCAGCTATTGGTGTGTCACCAGTGAGTGTTGCATTGGATGGAACATCAGTTAAGAAGAAAAGGGGCAGACCAAGAAAATATGGACCAGATGGGTTGGTGAATATGGCATTGTCACCAATGCCAATCTCATCTTCAGCACCATTTTCTAATAACTTTTCATCTGGGAAGCGAGGGAAACCAAGGGGGATGGATTACAAGCTGCCAAAGAAAGTTGGAGTGGATTATCTTGGTGGCTCTGATGGTACAAGCTTTATGCCCCATATCATTACTGTCAATAGTGGCGAGGACATAGCAATGAAGGTCATATCTTTTTCTCAACAAGGACCGCGTGCTATATGCATCTTATCTGCTAGTGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGAACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGAAAACCAAGGAACAAGAAGCAGGTCTGGAGGAATGAGTGTTTCATTGTCTAGTCCAGATGGTCGTGTTGTTGGTGGTGGAGTTGCTGGTCTTCTTGTAGCAGCAGGTCCTGTGCAGGTGGTGGTGGGAAGTTTTTTGCCATGCAGCCAGCAAGATCAGAAGCCAAAGAAGCCAAAGTCTGATTATGCACCTGCTTCTGTTACCCCTTCCATTGCAGTGTCTTCTGGACCACCACCCTCTACCAATGGTGGTGAAAAGGAGGTTGTCATGGGTGGACACATACTGCACAACTCAGGAGCAACCCTTAACTCAAACCTATCTCCTCCCTCGGCCTTTCGCCGGGAAAACTGGGTTAACATGCATTCCATGACAGACTCAATGAAGTCAGCCACTGATATCAACATATCCTTGCCAGATAGTTAA 1221 0.4529 MAKVLNGSANSSEQLLKKPKSVSFVFLFPSLLESFDGFSLWLPSMFKKVQTFDAGLIEGTKEREVFDICMEGREGMSSGVTVIGAEAPSAYHMAPRSEAPSQGGPPVPEAPAAAIGVSPVSVALDGTSVKKKRGRPRKYGPDGLVNMALSPMPISSSAPFSNNFSSGKRGKPRGMDYKLPKKVGVDYLGGSDGTSFMPHIITVNSGEDIAMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAAGPVQVVVGSFLPCSQQDQKPKKPKSDYAPASVTPSIAVSSGPPPSTNGGEKEVVMGGHILHNSGATLNSNLSPPSAFRRENWVNMHSMTDSMKSATDINISLPDS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00276 406 MobiDBLite consensus disorder prediction 333 347 - -
Vimu6g00276 406 SUPERFAMILY AF0104/ALDC/Ptd012-like 195 316 - -
Vimu6g00276 406 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 96 376 IPR039605 GO:0003680
Vimu6g00276 406 FunFam AT-hook motif nuclear-localized protein 1-like 198 328 - -
Vimu6g00276 406 ProSiteProfiles PPC domain profile profile. 193 334 IPR005175 -
Vimu6g00276 406 MobiDBLite consensus disorder prediction 315 353 - -
Vimu6g00276 406 CDD DUF296 198 288 IPR005175 -
Vimu6g00276 406 Gene3D - 198 327 - -
Vimu6g00276 406 Pfam Plants and Prokaryotes Conserved (PCC) domain 198 311 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00276 Vimu-Chr6 3289042 3294065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00276 75 341 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 54.153 5.93e-90 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00276 - - gmx:100777213 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00276 6 3289042 3294065 Vimu6g00276 6 3289042 3294065 ECH
Vimu6g00276 6 3289042 3294065 Vimu9g00557 9 6827880 6831279 PCT