Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00259 ATGGCTGCTGCTTGTGCTTTGTTCACTGCTGGCACTAACATTACCGAAGATGGAAATGTTAACAACGCAACTTCAAGTGCTGCTAGTCCTCTCACAAGTGCTTCTAACTCCAGCAACATGAGCAACGACGACCAACACACCCTACATGGCATCATGCCACACCCTCATTCTGAGAGGAAAATGCTCAGGAAAAGAATGGCTTCTGAGATGGACCATGTTAACGTTCATCTCACCCCACCACACAACTCTTCTTCCACCACTGATTATCCTAGGTTTCCTCGTCGAAGCTCCACCAACGTCAACATGTCATCCTTAGAAAAAGGGTCCACCACCACACCTACGTTAGCCGCAGGTACTTGTAGTAATAATGGCAATAATAATAATACTAGTAATAACTATCATTTTAATAATAGCAACCATAATAGTAGAAGTGGTAGTAGTATTTCGTCAAGAGATAACGTTGGCATTCCAAATTACCCCACTGTGACCGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCACCACCATCAATTCCTCTGCTGTTGCTCCAAACTACACTGCTCACCAACACCATCATTTCCAAGGACTTGTTGAAAGTCAAAGCCAGGACCTGCAGAACCCCGTGCCAGCAGTGTGTGGATTCTCGGGATTACCACTTTTTCCATCTCAAAGCCAAAGGAACCGAGACAACAACAACATCAACAACACCGCCACCGCCACCAACCTAAGAAGCGGTGGTGGAAATATTGTCGACGTGGTTGCTTCTTCTTCTTCTTCTCCTTCCATGGACGACACTTCAGCCGCCACAAGTGGTTGGATCGATGGTATATTGAAGGATCTCATTCACAGTTCAAACAGTGTTTCGATTCCCCAACTAATCAGCAACGTGAGGGAGATTATATACCCTTGCAACCCCAACCTTGCAACGATTCTTGAATACAGGTTGCGTCTTCTCACTGAGTCCGCCCTACAAAACAAAAGAGGCACAGAAGGGGTGCCTCTTCCACCTTCTGTGTCCTCAGTGAAGCTCGTGAATAATCGTGTGGATGGCATTGTTCCTAATCTGCACTTCACAGATGCATCAGGTGGTCCTGTGGTTGTGAATCAGCACATGTTGTCCAATTGGGGTGTACCTCCAATCACTCACCACCACGATAACAACGCAAACAACAACACCAACACCAACAATAACCCTTCAGTTTCTTTGGTTACTTTGCCTTCACCGCCACCACCACCCCATTATTCACCGCCACAAGAGAAGCAGCCTCACCCTCAAGAGGAAGATCTAGCAGCAACCAGCAGTGCTGAGGTGGCACTCACACGAAAGAAGAAAGAAGAGTTGCGGGAACAGAAGAAGAAAGACGAGGAGGGTCTGCATCTCCTCACTTTGCTGCTGCAGTGTGCAGAAGCTGTTTCAGCTGAGAATCTAGAAGACGCCAACAAGATGTTGCTGGAGATTTCCCAATTGTCAACACCGTTTGGCACATCAGCACAGCGAGTGGCCGCTTATTTCTCGGAAGCCATATCAGCAAGGTTGGTGAGTTCATGTTTGGGGATATATGCCACTTTGCCACACACCCATCAAAGCCACAAGGTGGCGTCGGCTTTCCAAGTGTTCAACGGTATCAGTCCTTTCGTGAAGTTCTCGCATTTCACAGCAAACCAAGCTATCCAAGAAGCTTTTGAAAGGGAAGAGAGGGTGCACATCATAGATCTAGATATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTCTACATTCTAGCTTCAAGACCCGGTGGAGCCCCTTATGTGAGGCTCACGGGGCTTGGTACTTCCATGGAAGCACTTGAAGCCACGGGTAAACGTTTGTCCGATTTTGCAAACAAACTTGGTCTTCCCTTTGAGTTCTTCCCGGTGGCTGAGAAAGTCGGGAACCTTGACCCTGAGAGGCTCAACGTTAGCAAAACCGAAGCTGTTGCAGTTCACTGGTTGCAACATTCCCTCTATGATGTCACCGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGGCTGGCACCTAAAGTGGTGACTGTGGTAGAGCAAGACCTAAGCAACAATGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCGGCGTTGTTTGACTCTCTTGGGTCTAGCTATGGGGAGGAGAGTGAAGAGAGGCATGTGGTGGAACAGCAGCTATTGTCTAGGGAGATTCGCAATGTGCTAGCTGTTGGAGGGCCATCAAGAACTGGGGAGCCAAAGTTTCACAACTGGAGGGAGAAGTTTCAGCAGTGTGGATTTAGAGGTATATCTCTAGCTGGTAATGCTGCAACTCAAGCTAGTCTACTCCTTGGTATGTTCCCATCAGAGGGTTATACCTTGGTGGAGGACAATGGCATCCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCTCCATTCCATACTGGCACTGCCATTACACATCACAACTAA 2499 0.4782 MAAACALFTAGTNITEDGNVNNATSSAASPLTSASNSSNMSNDDQHTLHGIMPHPHSERKMLRKRMASEMDHVNVHLTPPHNSSSTTDYPRFPRRSSTNVNMSSLEKGSTTTPTLAAGTCSNNGNNNNTSNNYHFNNSNHNSRSGSSISSRDNVGIPNYPTVTVTTNYSTMLLPSSTTINSSAVAPNYTAHQHHHFQGLVESQSQDLQNPVPAVCGFSGLPLFPSQSQRNRDNNNINNTATATNLRSGGGNIVDVVASSSSSPSMDDTSAATSGWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLATILEYRLRLLTESALQNKRGTEGVPLPPSVSSVKLVNNRVDGIVPNLHFTDASGGPVVVNQHMLSNWGVPPITHHHDNNANNNTNTNNNPSVSLVTLPSPPPPPHYSPPQEKQPHPQEEDLAATSSAEVALTRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFYILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNNGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKFQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTGTAITHHN 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00259 832 Coils Coil 433 453 - -
Vimu6g00259 832 MobiDBLite consensus disorder prediction 14 53 - -
Vimu6g00259 832 MobiDBLite consensus disorder prediction 75 153 - -
Vimu6g00259 832 MobiDBLite consensus disorder prediction 406 422 - -
Vimu6g00259 832 MobiDBLite consensus disorder prediction 386 405 - -
Vimu6g00259 832 MobiDBLite consensus disorder prediction 14 46 - -
Vimu6g00259 832 Pfam GRAS domain family 464 819 IPR005202 -
Vimu6g00259 832 ProSiteProfiles GRAS family profile. 454 819 IPR005202 -
Vimu6g00259 832 MobiDBLite consensus disorder prediction 77 153 - -
Vimu6g00259 832 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 424 814 IPR005202 -
Vimu6g00259 832 MobiDBLite consensus disorder prediction 380 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00259 Vimu-Chr6 3168827 3171876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00259 445 822 GRAS Transcription Factor Family AT5G41920 55.013 1.53e-140 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu6g00259 GRAS 2.6e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00259 - - gmx:100806779 1281.16