Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00255 ATGACTGGCCACCTGACGGCTAGGAGTGATGTCTATAGTTTTGGTGTTGTTCTTTTGGAGCTCTTAACGGGAAGGAAATCAGTTGACAAGACCAGACCTGGCAAGGAACAGAGCTTGGTAGATTGGGCAAGGCCAAAGCTAAATGACAAGAGAAAGCTGCTACAGATAATTGATCCTAGATTGGAGAATCAATACTCAGTGAGGGCTGCACAAAAAGCGTGTAGCTTGGCTTATTACTGTTTAAGTCAAAATCCCAAAGCGAGGCCCCTAATGAGCGATGTAGTGGAGACATTAGAACCCTTACAAAGTTCCAGTGTTGGTGCAGGTGAAGTCTCATTATCAGGATCAAATAGTGTGACTACTGGGCCTTTTGCCATGAATAAAATATCTGACTACCGTATGCGTCAAAGGTTCTCAAACAATGTTGGTCCTGGTTCTGCGTGTCGATCTCCAAACCCAAATTGTTCACCAGGTGCCCCAGCAGCACTACGGGTGAGATGA 501 0.4551 MTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGAGEVSLSGSNSVTTGPFAMNKISDYRMRQRFSNNVGPGSACRSPNPNCSPGAPAALRVR 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00255 166 PANTHER OS01G0588500 PROTEIN-RELATED 1 102 - -
Vimu6g00255 166 Gene3D Transferase(Phosphotransferase) domain 1 1 112 - -
Vimu6g00255 166 SUPERFAMILY Protein kinase-like (PK-like) 3 97 IPR011009 -
Vimu6g00255 166 MobiDBLite consensus disorder prediction 142 166 - -
Vimu6g00255 166 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00255 166 Pfam Protein tyrosine and serine/threonine kinase 3 98 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00255 Vimu-Chr6 3118204 3119077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00255 1 101 Receptor kinase-like Gene Family AT3G58690 52.475 2.00e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu6g00255 PK_Tyr_Ser-Thr 9.2e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00255 - - gmx:102662348 316.235