Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00248 ATGAAATATTTTGGAGGTGTATTCGGTTCCCTTCTATCCATATTCGGTTCTAGGGGTGGGAAGAATTTACATGTAACCTGTACTCAATTCCAGCCTGATAGTATGTGCTTCATGGTGGAGGTGCAGGCGCCATGTTCGACCAAGCTAGAGGTTGCTTTGGTGGTGAGCCCTGGATTATATGCGACGAAGGCTGAGGACACCTCCAGACGGCGTCGTGGAGTAAATTCTGTTGCCGGCAAAATCGAGGGCCAAGACGAAGCTCTACAATATCGTTTGGCTCTGCAAACTGCTAAAGCCATTGACACGCTTCACTCCTCGACCTCTTTTGTGATTCACCGTGACATAAAGTATGCGAACGTTCTCATCTACCGCAACTACAATGCGAGATTGGGGGATTTTGGTTTGGCCTTGAGAGGCCATGTTGATGACTACAGACTCAGGTTCACTCCCCCTACAGGCACCATGGGCTATCTTGATCCTTGTTATGTAACTCCTGATAATTTGAGCACCAAAAGTGATGTTTTCAACTTTGAGATTTTGCTGCTGGAGATTATAAGAGAAAGGAAGGCCATTGACATCACTTATTCACCACCTTCTATCAAAGGGAAGCTTTTGGCTGTTTATGATCCTAGAATTGCACCTCCCAAGGATCCGGTTGTGAGGAAGCAATTGACTGTGATTGCTGCCAAGTGTGTGAAGTCTTGCAGGGAGAGGAGACCTTCCATTAAGGAGGTTGTTACTTGGCTCTGTGAGCTGTGTAAACTGGTGCCTCTTCATTCTTGGAGTGGTTTTAACAACCCTTGCATGATGGTTGAGATTGTGGGGCGCCCCGTCGAAGCAAGAAATGGAGAATTCAACTCTAGACTGGCAAGTGTGGAAGAGGGAAATATTGAAGCTTTGGATGGAAGACTTTCCAAATCTGCAATGAGGTATTCTCGGAGGGTGTATTCTGATTTGGAGTCTGAATCACCAAACTCGGGTCCGAAACACCATTGTCGTGTCGAACAACGCGAAGCGAAACATTACGTACCACTGCACCAATTTAAACCCCCATTGTTTGGCCGAATTTTGTGCCTTCGAACTTTGAATTTCGAAATTCGAAATAAATGGGAAGAGATCAAAACTGAGCTTCGAAAAGTCTACGCCGGTGACGAGGCGCTGGTGCTGCACAGGAATTCCAGTGAGTTCGAAAAGGCGATCCTTGATGAAACTCACGTAGAGGATCAGAGAGGGAAATAA 1239 0.4625 MKYFGGVFGSLLSIFGSRGGKNLHVTCTQFQPDSMCFMVEVQAPCSTKLEVALVVSPGLYATKAEDTSRRRRGVNSVAGKIEGQDEALQYRLALQTAKAIDTLHSSTSFVIHRDIKYANVLIYRNYNARLGDFGLALRGHVDDYRLRFTPPTGTMGYLDPCYVTPDNLSTKSDVFNFEILLLEIIRERKAIDITYSPPSIKGKLLAVYDPRIAPPKDPVVRKQLTVIAAKCVKSCRERRPSIKEVVTWLCELCKLVPLHSWSGFNNPCMMVEIVGRPVEARNGEFNSRLASVEEGNIEALDGRLSKSAMRYSRRVYSDLESESPNSGPKHHCRVEQREAKHYVPLHQFKPPLFGRILCLRTLNFEIRNKWEEIKTELRKVYAGDEALVLHRNSSEFEKAILDETHVEDQRGK 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00248 412 Gene3D Transferase(Phosphotransferase) domain 1 80 257 - -
Vimu6g00248 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 110 122 IPR008271 GO:0004672|GO:0006468
Vimu6g00248 412 Pfam Protein kinase domain 91 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00248 412 SUPERFAMILY Protein kinase-like (PK-like) 84 249 IPR011009 -
Vimu6g00248 412 PANTHER OS01G0253100 PROTEIN 90 251 - -
Vimu6g00248 412 ProSiteProfiles Protein kinase domain profile. 1 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00248 Vimu-Chr6 3042161 3044962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00248 75 249 Receptor kinase-like Gene Family AT3G59420 40.415 3.51e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu6g00248 Pkinase 1.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00248 - - vum:124832395 414.075