Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00245 ATGTCTCCTGAGTATGCTATGTTTGGACACTTCTCTGAAAAATCTGATGTTTACAGTTTTGGTGTTATGATTCTTGAGATTATTAGTGGCAAAAAGAATATAAGTTCACATGAATCACATTGTGTTGCTGATGGTCTTCTAAAATTTGTTTGGAGACATTGGAGGGATGGAACAACATTGAACACATTGGACCCCAAATTAGAAGAAAATTATTCTAATGTTGAAGTCACGAGATGTATTCAAATTGGTTTATTATGTGTTCAAGAAAATCCAGATGTTAGACCTACAATGGTAACAATTGTTTCATATCTTAGTAGTCACTCGATCGAGCTACCATCTCCAAAAGAACCAATATTTTTCTTAAACCATAGAATGAACCCAATTGTTGCACATGAATCAAGCTCAGGCCAAGATGTCAACTCTATACCATCTTCTATCAATGACATATCTCAAAGTGAATTTTATCCTCGATAG 474 0.3439 MSPEYAMFGHFSEKSDVYSFGVMILEIISGKKNISSHESHCVADGLLKFVWRHWRDGTTLNTLDPKLEENYSNVEVTRCIQIGLLCVQENPDVRPTMVTIVSYLSSHSIELPSPKEPIFFLNHRMNPIVAHESSSGQDVNSIPSSINDISQSEFYPR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00245 157 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 150 - -
Vimu6g00245 157 MobiDBLite consensus disorder prediction 132 157 - -
Vimu6g00245 157 Gene3D Transferase(Phosphotransferase) domain 1 1 113 - -
Vimu6g00245 157 ProSiteProfiles Protein kinase domain profile. 1 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g00245 157 SUPERFAMILY Protein kinase-like (PK-like) 1 139 IPR011009 -
Vimu6g00245 157 Pfam Protein tyrosine and serine/threonine kinase 1 104 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00245 Vimu-Chr6 3021817 3022407 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00245 1 157 Receptor kinase-like Gene Family AT4G23140 49.057 1.45e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu6g00245 PK_Tyr_Ser-Thr 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00245 - - pvu:PHAVU_008G077500g 268.855