Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00231 ATGGCTGCCAATTCTGGGAACATGTCATTTGCATCGTCTCAATCTGGTTCACAGGCCCATGGGGATACTGATTCTGTCCACGTTGCAGTGTGTTCCCTTTGTGAAAAGGCCCTATCACATGATAATGAGATGGCAAGCGATCTTGCTAGCCATGGTGTGTGCGGCGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACATTTACCCAAAGTTCACGAAGGAGGCTTAGAGGAAGATTCAGGCACAACAGTTCTGAATCCGTGGATAATAGTTTCTCACAGCAGATCCCTCATGTGCATAGTATGGTGAGACGATATGAATCACTTGCCTCTGGGGAGGATGATCAACTTGTGGATGGTGACACCCCTGCTTGGTCAATGCAATATGTTAGTACACACACTACCCCAAGTGGGTCTAGAAGGTGGAGGCATGTTCTGTCTGACACTGACAGTGATGGTTTTGATAATTGGACTTCTCTTTATGGTGAAAATGAATCAAGTGTGAGTTTTAGACGGTATAGGGTTCCCCATGATGATGAGATAGAGTCTTTCTCTGCTTATGGAGGCGACTCAGATATTTCTATGGATACTCATAGTTTTGTAGGCACTGGAGTCTTTAATTTACCAGATGAGGGAGATGAGGGGGATGAGTTCGATAGTGACACTGACATTGATCCAATGCATGCTGGCCATGGCCAATGGATTTCAGATGAAGATGATGAAGAAGAGGATGTAGATGGGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGATGATGATGATGATAATGATGATGATGAAGAGGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAATCTGAAGCCACAGCCCGCCTTCAATTTTTTTTCTCCTCAAGTCCAAGTGAGAGCAGAGATCGCAACAATTGGGAGCAGAGGTTTAATTCTACTGAATCTGAGGGAATGTTTAGCCATATAATCAGGGATACTTGGCAAGCTTTTGAGGATGTTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACGTTTCGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAACTCAAGACGAGGAGCTCCTCCTGCGGCCGTGTCTTTCACAAAAAATTTGCCACGTGTAGTCATTGGCAAAGAACATGAGAAGCATGATGAACTAGTTTGTGCCATTTGCAAAGATGTCCTGGCACCTGGCACTGAAGTAAATCAACTTCCTTGTTCTCACCTTTATCACATTGATTGCATTTTGCCATGGTTGAGTGCACGGAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACCGATGATAAGGATTATGAAGAAGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAAATGGATGTAATAGATGATAGTTCCTCTGATGTTTCTGATGGAGACGAGTTGAATGAAGAGAATGGTAGTAATCAAGATGTTAGCTCAGGTTCTACCGCAAATTCTTCTATAAGAAGAAGTGGTAGAGGAAGATGGCTTTTTCTTGCTGCAGCTCCAATTGTTAGTTTAGTGGGCATTGTTCTTGTATTTTGGTTAGGCAATAACTCTGAAATTGAGGGAAATAGACATCTGGGCAGTCATTACTTATCCGGGCAAAATCAACATGTTTATGCATCTCCAAACCAGAGGGACAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA 1722 0.4326 MAANSGNMSFASSQSGSQAHGDTDSVHVAVCSLCEKALSHDNEMASDLASHGVCGDCKFLLLEDFGNHTFTQSSRRRLRGRFRHNSSESVDNSFSQQIPHVHSMVRRYESLASGEDDQLVDGDTPAWSMQYVSTHTTPSGSRRWRHVLSDTDSDGFDNWTSLYGENESSVSFRRYRVPHDDEIESFSAYGGDSDISMDTHSFVGTGVFNLPDEGDEGDEFDSDTDIDPMHAGHGQWISDEDDEEEDVDGEEEEEEEEEEEDDDDDNDDDEEEEDREWELAEAEESEATARLQFFFSSSPSESRDRNNWEQRFNSTESEGMFSHIIRDTWQAFEDVDLPHGANFGDYLDARRFEDLLEHLAENDNSRRGAPPAAVSFTKNLPRVVIGKEHEKHDELVCAICKDVLAPGTEVNQLPCSHLYHIDCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQMDVIDDSSSDVSDGDELNEENGSNQDVSSGSTANSSIRRSGRGRWLFLAAAPIVSLVGIVLVFWLGNNSEIEGNRHLGSHYLSGQNQHVYASPNQRDSRSRRWWCPF 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00231 573 CDD RING-H2_PA-TM-RING 396 438 - -
Vimu6g00231 573 MobiDBLite consensus disorder prediction 206 286 - -
Vimu6g00231 573 MobiDBLite consensus disorder prediction 447 470 - -
Vimu6g00231 573 SMART ring_2 397 437 IPR001841 -
Vimu6g00231 573 Pfam Ring finger domain 397 438 IPR001841 -
Vimu6g00231 573 MobiDBLite consensus disorder prediction 487 503 - -
Vimu6g00231 573 MobiDBLite consensus disorder prediction 1 21 - -
Vimu6g00231 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 444 IPR013083 -
Vimu6g00231 573 Coils Coil 240 260 - -
Vimu6g00231 573 MobiDBLite consensus disorder prediction 447 503 - -
Vimu6g00231 573 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 247 442 - -
Vimu6g00231 573 ProSiteProfiles Zinc finger RING-type profile. 397 438 IPR001841 -
Vimu6g00231 573 MobiDBLite consensus disorder prediction 238 281 - -
Vimu6g00231 573 FunFam E3 ubiquitin-protein ligase RING1-like isoform A 357 444 - -
Vimu6g00231 573 SUPERFAMILY RING/U-box 387 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00231 Vimu-Chr6 2866573 2868294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00231 13 573 C3H Transcription Factor Family AT5G01980 42.637 1.83e-114 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00231 - - pvu:PHAVU_008G078700g 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00231 6 2866573 2868294 Vimu6g00231 6 2866573 2868294 ECH