Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g00231 | ATGGCTGCCAATTCTGGGAACATGTCATTTGCATCGTCTCAATCTGGTTCACAGGCCCATGGGGATACTGATTCTGTCCACGTTGCAGTGTGTTCCCTTTGTGAAAAGGCCCTATCACATGATAATGAGATGGCAAGCGATCTTGCTAGCCATGGTGTGTGCGGCGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACATTTACCCAAAGTTCACGAAGGAGGCTTAGAGGAAGATTCAGGCACAACAGTTCTGAATCCGTGGATAATAGTTTCTCACAGCAGATCCCTCATGTGCATAGTATGGTGAGACGATATGAATCACTTGCCTCTGGGGAGGATGATCAACTTGTGGATGGTGACACCCCTGCTTGGTCAATGCAATATGTTAGTACACACACTACCCCAAGTGGGTCTAGAAGGTGGAGGCATGTTCTGTCTGACACTGACAGTGATGGTTTTGATAATTGGACTTCTCTTTATGGTGAAAATGAATCAAGTGTGAGTTTTAGACGGTATAGGGTTCCCCATGATGATGAGATAGAGTCTTTCTCTGCTTATGGAGGCGACTCAGATATTTCTATGGATACTCATAGTTTTGTAGGCACTGGAGTCTTTAATTTACCAGATGAGGGAGATGAGGGGGATGAGTTCGATAGTGACACTGACATTGATCCAATGCATGCTGGCCATGGCCAATGGATTTCAGATGAAGATGATGAAGAAGAGGATGTAGATGGGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGATGATGATGATGATAATGATGATGATGAAGAGGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAATCTGAAGCCACAGCCCGCCTTCAATTTTTTTTCTCCTCAAGTCCAAGTGAGAGCAGAGATCGCAACAATTGGGAGCAGAGGTTTAATTCTACTGAATCTGAGGGAATGTTTAGCCATATAATCAGGGATACTTGGCAAGCTTTTGAGGATGTTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACGTTTCGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAACTCAAGACGAGGAGCTCCTCCTGCGGCCGTGTCTTTCACAAAAAATTTGCCACGTGTAGTCATTGGCAAAGAACATGAGAAGCATGATGAACTAGTTTGTGCCATTTGCAAAGATGTCCTGGCACCTGGCACTGAAGTAAATCAACTTCCTTGTTCTCACCTTTATCACATTGATTGCATTTTGCCATGGTTGAGTGCACGGAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACCGATGATAAGGATTATGAAGAAGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAAATGGATGTAATAGATGATAGTTCCTCTGATGTTTCTGATGGAGACGAGTTGAATGAAGAGAATGGTAGTAATCAAGATGTTAGCTCAGGTTCTACCGCAAATTCTTCTATAAGAAGAAGTGGTAGAGGAAGATGGCTTTTTCTTGCTGCAGCTCCAATTGTTAGTTTAGTGGGCATTGTTCTTGTATTTTGGTTAGGCAATAACTCTGAAATTGAGGGAAATAGACATCTGGGCAGTCATTACTTATCCGGGCAAAATCAACATGTTTATGCATCTCCAAACCAGAGGGACAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA | 1722 | 0.4326 | MAANSGNMSFASSQSGSQAHGDTDSVHVAVCSLCEKALSHDNEMASDLASHGVCGDCKFLLLEDFGNHTFTQSSRRRLRGRFRHNSSESVDNSFSQQIPHVHSMVRRYESLASGEDDQLVDGDTPAWSMQYVSTHTTPSGSRRWRHVLSDTDSDGFDNWTSLYGENESSVSFRRYRVPHDDEIESFSAYGGDSDISMDTHSFVGTGVFNLPDEGDEGDEFDSDTDIDPMHAGHGQWISDEDDEEEDVDGEEEEEEEEEEEDDDDDNDDDEEEEDREWELAEAEESEATARLQFFFSSSPSESRDRNNWEQRFNSTESEGMFSHIIRDTWQAFEDVDLPHGANFGDYLDARRFEDLLEHLAENDNSRRGAPPAAVSFTKNLPRVVIGKEHEKHDELVCAICKDVLAPGTEVNQLPCSHLYHIDCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQMDVIDDSSSDVSDGDELNEENGSNQDVSSGSTANSSIRRSGRGRWLFLAAAPIVSLVGIVLVFWLGNNSEIEGNRHLGSHYLSGQNQHVYASPNQRDSRSRRWWCPF | 573 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g00231 | 573 | CDD | RING-H2_PA-TM-RING | 396 | 438 | - | - | |
Vimu6g00231 | 573 | MobiDBLite | consensus disorder prediction | 206 | 286 | - | - | |
Vimu6g00231 | 573 | MobiDBLite | consensus disorder prediction | 447 | 470 | - | - | |
Vimu6g00231 | 573 | SMART | ring_2 | 397 | 437 | IPR001841 | - | |
Vimu6g00231 | 573 | Pfam | Ring finger domain | 397 | 438 | IPR001841 | - | |
Vimu6g00231 | 573 | MobiDBLite | consensus disorder prediction | 487 | 503 | - | - | |
Vimu6g00231 | 573 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Vimu6g00231 | 573 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 357 | 444 | IPR013083 | - | |
Vimu6g00231 | 573 | Coils | Coil | 240 | 260 | - | - | |
Vimu6g00231 | 573 | MobiDBLite | consensus disorder prediction | 447 | 503 | - | - | |
Vimu6g00231 | 573 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 247 | 442 | - | - | |
Vimu6g00231 | 573 | ProSiteProfiles | Zinc finger RING-type profile. | 397 | 438 | IPR001841 | - | |
Vimu6g00231 | 573 | MobiDBLite | consensus disorder prediction | 238 | 281 | - | - | |
Vimu6g00231 | 573 | FunFam | E3 ubiquitin-protein ligase RING1-like isoform A | 357 | 444 | - | - | |
Vimu6g00231 | 573 | SUPERFAMILY | RING/U-box | 387 | 444 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g00231 | Vimu-Chr6 | 2866573 | 2868294 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g00231 | 13 | 573 | C3H Transcription Factor Family | AT5G01980 | 42.637 | 1.83e-114 | 348 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g00231 | - | - | pvu:PHAVU_008G078700g | 922.154 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu6g00231 | 6 | 2866573 | 2868294 | Vimu6g00231 | 6 | 2866573 | 2868294 | ECH |